Table 1.
Probe Characteristics
|
Probe group |
Compositiona |
Distinct GenBank identifiersb |
Distinct UniGene clustersc |
Not associated with a UniGene clusterc |
|---|---|---|---|---|
| Operon Human Genome Oligo Set Version 1 | 13,971 long oligonucleotide probesd | 13,652 | 11,158 | 2120 |
| Operon Human Genome Oligo Set Version 2 | 21,329 long oligonucleotide probesd | 21,306 | 19,888 | 728 |
|
Affymetrix U95Av2 GeneChip
|
12,558 sets of oligonucleotides, ∼16 perfect match 25-mers per set
|
11,282
|
8328
|
1695
|
-
↵a Not including control probes
-
↵b According to GenBank accession numbers provided by the manufacturers
-
↵c UniGene Build 155 was used to map GenBank identifiers to gene clusters
-
↵d The large majority of oligonucleotides were 70-mers (Version 1) or 69-mers (Version 2). In a small number of cases, shorter probes were produced to keep predicted melting temperatures within the desired range (see Methods)
