Subsystem Identification Through Dimensionality Reduction of Large-Scale Gene Expression Data

Table 1.

Robustness of NMF Basis Vectors to Noise


Noise added

NMF basis vectors

Reconstructed data

Original data
0.2 0.933 0.930 0.943
0.5 0.879 0.893 0.781
1 0.865 0.816 0.573
5
0.368
0.313
0.159
  • Gaussian noise was added to the original data and was quantified as a multiplier of the standard deviation of the original data set. (NMF basis vectors) The average correlation of basis vectors from the original data to the basis vectors from original data with added noise. (Reconstructed data) The average correlation of the reconstructed data from the basis vectors with and without noise. (Original data) Average correlation of the original data to the data with added noise

This Article

  1. Genome Res. 13: 1706-1718

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