Table 2.
Codon Usage in C. glutamicum and C. efficiens
|
|
|
|
Fraction valueb |
||
|---|---|---|---|---|---|
| Codon |
Amino acid |
Rare
codona |
C. glutamicum |
C. efficiens |
|
| GCA | Ala | 30.66 | 12.29 | ||
| GCC | Ala | 27.18 | 54.41 | ||
| GCG | Ala | 23.15 | 28.82 | ||
| GCT | Ala | 24.96 | 8.75 | ||
| TGC | Cys | 4.87 | 6.33 | ||
| TGT | Cys | 2.66 | 2.81 | ||
| GAC | Asp | 26.11 | 34.68 | ||
| GAT | Asp | 32.89 | 29.26 | ||
| GAA | Glu | 35.50 | 18.10 | ||
| GAG | Glu | 27.41 | 42.27 | ||
| TTC | Phe | 22.87 | 26.53 | ||
| TTT | Phe | 13.78 | 3.82 | ||
| GGA | Gly | 15.43 | 12.47 | ||
| GGC | Gly | 33.34 | 37.00 | ||
| GGG | Gly | + | 6.97 | 18.19 | |
| GGT | Gly | 24.44 | 31.09 | ||
| CAC | His | 14.52 | 19.77 | ||
| CAT | His | 7.22 | 8.68 | ||
| ATA | Ile | + | 2.05 | 1.89 | |
| ATC | Ile | 33.55 | 42.38 | ||
| ATT | Ile | 21.48 | 5.21 | ||
| AAA | Lys | 14.27 | 5.58 | ||
| AAG | Lys | 20.75 | 17.38 | ||
| CTA | Leu | + | 5.94 | 1.78 | |
| CTC | Leu | 22.05 | 33.67 | ||
| CTG | Leu | 27.38 | 47.63 | ||
| CTT | Leu | 17.01 | 8.15 | ||
| TTA | Leu | + | 5.31 | 1.38 | |
| TTG | Leu | 19.99 | 6.08 | ||
| ATG | Met | 21.90 | 19.52 | ||
| AAC | Asn | 21.94 | 18.40 | ||
| AAT | Asn | 11.29 | 6.26 | ||
| CCA | Pro | 16.80 | 6.76 | ||
| CCC | Pro | 9.83 | 20.98 | ||
| CCG | Pro | 10.38 | 21.56 | ||
| CCT | Pro | 11.26 | 3.94 | ||
| CAA | Gln | 13.23 | 3.33 | ||
| CAG | Gln | 20.76 | 31.64 | ||
| AGA | Arg | + | 2.71 | 1.94 | |
| AGG | Arg | + | 3.79 | 4.73 | |
| CGA | Arg | + | 6.73 | 4.07 | |
| CGC | Arg | 24.54 | 26.91 | ||
| CGG | Arg | + | 5.13 | 16.99 | |
| CGT | Arg | 13.50 | 12.90 | ||
| AGC | Ser | 10.89 | 8.91 | ||
| AGT | Ser | + | 5.28 | 3.76 | |
| TCA | Ser | + | 8.43 | 4.01 | |
| TCC | Ser | 21.01 | 25.23 | ||
| TCG | Ser | + | 7.71 | 7.91 | |
| TCT | Ser | 10.99 | 2.43 | ||
| ACA | Thr | + | 7.90 | 4.23 | |
| ACC | Thr | 32.14 | 46.33 | ||
| ACG | Thr | 8.96 | 10.18 | ||
| ACT | Thr | 12.51 | 3.22 | ||
| GTA | Val | + | 8.41 | 5.23 | |
| GTC | Val | 22.22 | 34.05 | ||
| GTG | Val | 29.01 | 37.03 | ||
| GTT | Val | 21.03 | 9.58 | ||
| TGG | Trp | 14.13 | 13.21 | ||
| TAC | Tyr | 14.40 | 13.35 | ||
|
TAT
|
Tyr
|
|
7.45
|
5.00
|
|
