Table 3.
Available Searches in the CAS with Descriptions
|
Name |
Description |
|---|---|
| ID search | Search for clones using various identifiers: clone ID, sequence ID, rearray ID, and DDBJ accession number. |
| Keyword search with curated annotations | Search for entries with specified keywords in the curated annotations. |
| Keyword search with automated annotations | Search for entries with specified keywords in the curated annotations. |
| Category search with automated annotations | Search for entries in specified categories assigned during automated annotation. |
| InterPro/Pfam domain search. | Search for entries by InterPro/Pfam domains. Users can specify an Interpro/Pfam ID or select from a list of all domains. |
| GO ID search | Search for entries by computationally assigned GO terms. Users can specify a GO ID or select from a list of all GO terms. |
| Repeat search | Search for entries by repeats content. Users can specify repeat ID or select from a list of all repeats. |
| Library search | Search for entries by source library. Users can specify a library ID or select from a list of libraries. |
| IPSORT prediction search | Search for entries by IPSORT results. |
| DNA length search | Search for entries by nucleotide sequence lengths. Users can specify both lower and upper bounds. |
|
Amino acid/predicted CDS length search
|
Search for entries by coding amino acid sequence or predicted CDS lengths. Users can specify both lower and upper bound of
their length; for predicted CDS length search, they can select a CDS prediction method.
|
