The Mammalian Protein–Protein Interaction Database and Its Viewing System That Is Linked to the Main FANTOM2 Viewer

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Figure 3Figure 3
Figure 3

Analysis of interaction networks with the PPI Viewer. (A) Protein interactions involved in the formation of COPII vesicles. The components of COPII vesicles, Sec23 and Sec31, are connected by two interactions derived from internal (red edge) and external (blue edge) PPIs. (B) Interaction of LIM domain proteins with single-stranded-DNA-binding protein 2 (SSBP2, clone ID 2310079I02). Our PPI assay identified 14 interaction partners of this clone; but setting the luciferase reporter activity parameter to 3 reduced the number of displayed proteins to only 4.

This Article

  1. Genome Res. 13: 1534-1541

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