Annotated and Translated CDS by CDS Programs
|
|
Annotated |
Translated |
rsCDS |
NCBI CDS |
ProCrest |
DECODER |
Longest-ORF |
Truncated-ORF |
Manual |
|---|---|---|---|---|---|---|---|---|---|
| In-frame (complete) | 10,759 | 10,759 | 5,287 | 8,343 | 9,477 | 9,517 | 10,409 | 0 | 43 |
| In-frame (partial) | 1,804 | 1,804 | 858 | 959 | 750 | 1,000 | 0 | 1,498 | 6 |
| FS/stop (complete) | 1,695 | 1,508 | 1,094 | 3 | 314 | 847 | 0 | 0 | 41 |
| FS/stop (partial) | 324 | 274 | 244 | 0 | 1 | 59 | 0 | 0 | 11 |
| Total (clones) | 14,582 | 14,345 | 7,483 | 9,305 | 10,542 | 11,423 | 10,409 | 1,498 | 101 |
|
Sensitivity (%)
|
—
|
—
|
52.2
|
64.9
|
73.5
|
79.6
|
72.6
|
10.4
|
0.7
|
-
The number of representative clones annotated and translated as complete or partial CDS is shown in the left two columns. “In-frame” means that the CDS region was determined without frameshift and/or stop codon error correction, and “FS/stop” means that the CDS region was completed after compensation for frameshifts or stop codons. The number of predicted CDS for each program, and its sensitivity, are shown in the following six columns. The sum of translated CDS regions calculated by each program was not 14,345 because some clones were translated by more than one program. 101 CDSs were not predicted by any program, but annotated manually
