Table 1.
Zinc Finger Domains Listed in the IterPro Database
|
InterPro |
Name |
Function |
Specificity |
|
|---|---|---|---|---|
| IPR000882 | C2H2 type | Nucleic acid-binding | DNA/RNA | |
| IPR001841 | RING finger | Protein-protein interactions | Proteins | |
| IPR001909 | KRAB | Protein-protein interactions | Proteins | |
| IPR001781 | Zn-binding protein, LIM | Protein-protein interactions | Proteins | |
| IPR001965 | PHD finger | Protein-protein interactions | Proteins | |
| IPR001628 | C4-type steroid receptor | Nucleic acid-binding | DNA | |
| IPR002219 | Protein kinase C phorbol ester/diacylglycerol binding | Lipids | Diacylglycerol and phorbol esters | |
| IPR000315 | B-box | Protein-protein interactions | Proteins | |
| IPR001878 | Knuckle, CCHC type | Nucleic acid-binding | DNA | |
| IPR000571 | C-x8-C-x5-C-x3-H type | Nucleic acid-binding | RNA | |
| IPR000306 | FYVE type | Lipids | Phosphatidylinositol-3-phosphate | |
| IPR001876 | Ran-binding protein | Protein-protein interactions | RanGDP | |
| IPR001164 | GCS-type | Protein-protein interactions | Protein | |
| IPR001594 | DHHC type | Protein-protein/nucleic acid-binding | Protein/DNA | |
| IPR003604 | U1-like | Nucleic acid-binding | RNA/DNA | |
| IPR000379 | GATA type | Nucleic acid-binding | DNA | |
| IPR000433 | ZZ type | Protein-protein interactions | Unknown | |
| IPR002893 | MYND type | Nucleic acid-binding | DNA | |
| IPR001293 | TRAF type | Protein-protein interactions | Protein | |
| IPR000058 | AN1-like | Nucleic acid-binding | DNA | |
| IPR001562 | Tec/Btk domain | Protein-protein interactions | Protein | |
| IPR004217 | Tim10/DDP type | Protein-protein interactions | Protein | |
| IPR002653 | A20-like | Protein-protein interactions | Protein | |
| IPR004181 | MIZ type | Nucleic acid-binding | DNA | |
| IPR001275 | DM DNA-binding | Nucleic acid-binding | DNA | |
| IPR003000 | Silent information regulator protein Sir2 | Nucleic acid-binding | DNA | |
| IPR000465 | XPA protein | Nucleic acid-binding | DNA | |
| IPR001510 | NAD+ ADP-ribosyltransferase | Nucleic acid-binding | ssDNA | |
| IPR003071 | Orphan nuclear receptor, HMR type | Nucleic acid-binding | DNA | |
| IPR003656 | BED finger | Nucleic acid-binding | DNA | |
| IPR003957 | Histone-like transcription factor/archaeal histone/topoisomerase | Nucleic acid-binding | DNA | |
| IPR004198 | C5HC2 type | Nucleic acid-binding | DNA | |
| IPR000380 | Prokaryotic DNA topoisomerase I | Nucleic acid-binding | DNA | |
| IPR001529 | DNA-directed RNA polymerase, M/15 kD subunit | Nucleic acid-binding | DNA | |
| IPR002515 | C2HC type | Nucleic acid-binding | DNA | |
| IPR002857 | CXXC type | Nucleic acid-binding | DNA/methyl cytosine | |
| IPR003126 | Zn-finger (putative), N-recognin | Protein-protein interactions | Protein | |
| IPR000197 | TAZ finger | Protein-protein interactions | Protein | |
| IPR000678 | Nuclear transition protein 2 | Protein-protein interactions | Protein | |
| IPR000967 | NF-X1 type | Nucleic acid-binding | DNA/X-box motif | |
| IPR000976 | Wilm's tumor protein | Nucleic acid-binding | DNA | |
| IPR002735 | Translation initiation factor IF5 | Nucleic acid-binding | DNA | |
| IPR002906 | Ribosomal protein S27a | Nucleic acid-binding | RNA/DNA | |
| IPR003079 | Nuclear receptor ROR | Nucleic acid-binding | DNA | |
| IPR003655 | KRAB-related | Nucleic acid-binding | DNA | |
| IPR004457 | ZPR1 type | Protein-protein interactions | Protein | |
| Domains commonly associated with zinc finger domains | ||||
| IPR000210 | BTP/POZ domain | Protein-protein interactions | Proteins | |
| IPR001214 | SET-domain of transcriptional regulator | Protein-protein interactions | Protein | |
| IPR003309 | SCAN domain | Protein-protein interactions | Protein | |
| IPR003879 | Butyrophylin C-terminal DUF | Protein-protein interactions | Protein | |
| IPR002999 | Tudor domain | Unknown | Unknown | |
|
IPR001258
|
NHL repeat
|
Protein-protein interactions
|
Protein
|
|
