Table 1.
Top 20 InterPro Entries for Different Mouse Protein Sequence Sets and Human Proteome
|
|
Mouse FANTOM RPS sequences |
Mouse FANTOM VPS sequences |
Celera R13d |
M. musculus IPIs |
H. sapiens IPI |
|
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IntroPro |
Proteins matched (Proteome coverage) |
Rank* |
Proteins matched (Proteome coverage) |
Rank* |
Proteins matched (Proteome coverage) |
Rank* |
Proteins matched (Proteome coverage) |
Rank* |
Proteins matched (Proteome coverage) |
Rank* |
Description |
|||||
| IPR000694 | 1001 (5.3%) | 1 | 1701 (5.0%) | 2 | 1156 (5.6%) | 3 | 544 (0.8%) | 3 | 219 (0.7%) | 25 | Proline-rich region | |||||
| IPR000822 | 460 (2.5%) | 2 | 795 (2.3%) | 4 | 682 (3.3%) | 4 | 437 (1.7%) | 6 | 942 (3.0%) | 1 | Zn-finger, C2H2 type | |||||
| IPR000719 | 419 (2.2%) | 3 | 831 (2.4%) | 5 | 553 (2.7%) | 7 | 448 (1.7%) | 5 | 696 (2.2%) | 3 | Eukaryotic protein kinase | |||||
| IPR002290 | 400 (2.1%) | 4 | 777 (2.3%) | 7 | 484 (2.3%) | 9 | 283 (1.1%) | 7 | 459 (1.5%) | 5 | Serine/Threonine protein kinase | |||||
| IPR001245 | 383 (2.0%) | 5 | 735 (2.1%) | 8 | 445 (2.2%) | 10 | 179 (0.7%) | 18 | 288 (0.9%) | 15 | Tyrosine protein kinase | |||||
| IPR000276 | 354 (1.9%) | 6 | 544 (1.6%) | 9 | 1176 (5.7%) | 2 | 1347 (5.2%) | 1 | 587 (1.9%) | 4 | Rhodopsin-like GPCR superfamily | |||||
| IPR003599 | 313 (1.7%) | 7 | 821 (2.4%) | 6 | 507 (2.5%) | 8 | 164 (0.6%) | 20 | 351 (1.1%) | 10 | Immunoglobulin subtype | |||||
| IPR003006 | 291 (1.6%) | 8 | 832 (2.4%) | 3 | 538 (2.6%) | 6 | 604 (2.3%) | 4 | 877 (2.8%) | 2 | Immunoglobulin/major histocompatibility complex | |||||
| IPR001680 | 218 (1.2%) | 9 | 457 (1.3%) | 10 | 268 (1.3%) | 13 | 224 (0.9%) | 11 | 369 (1.2%) | 6 | G-protein beta WD-40 repeat | |||||
| IPR001356 | 214 (1.1%) | 10 | 343 (1.0%) | 15 | 239 (1.2%) | 20 | 234 (0.9%) | 10 | 256 (0.8%) | 19 | Homeobox | |||||
| IPR001841 | 199 (1.1%) | 11 | 400 (1.2%) | 13 | 251 (1.2%) | 18 | 207 (0.8%) | 13 | 360 (1.2%) | 9 | Zn-finger, RING | |||||
| IPR001611 | 190 (1.0%) | 12 | 340 (1.0%) | 17 | 238 (1.2%) | 21 | 139 (0.5%) | 27 | 238 (0.8%) | 21 | Leucine-rich repeat | |||||
| IPR000504 | 185 (1.0%) | 13 | 407 (1.2%) | 12 | 287 (1.4%) | 11 | 205 (0.8%) | 11 | 339 (1.1%) | 8 | RNA-binding region RNP-1 (RNA recognition motif) | |||||
| IPR001849 | 182 (1.0%) | 14 | 317 (0.9%) | 19 | 214 (1.0%) | 25 | 172 (0.7%) | 18 | 329 (1.1%) | 11 | Pleckstrin-like | |||||
| IPR002048 | 181 (1.0%) | 15 | 324 (0.9%) | 14 | 241 (1.2%) | 14 | 193 (0.7%) | 13 | 282 (0.9%) | 14 | Calcium-binding EF-hand | |||||
| IPR002110 | 177 (0.9%) | 16 | 303 (0.9%) | 22 | 225 (1.1%) | 23 | 156 (0.6%) | 20 | 294 (0.9%) | 15 | Ankyrin | |||||
| IPR001452 | 170 (0.9%) | 17 | 312 (0.9%) | 20 | 191 (0.9%) | 26 | 188 (0.7%) | 15 | 283 (0.9%) | 17 | SH3 domain | |||||
| IPR003598 | 170 (0.9%) | 18 | 340 (1.0%) | 17 | 233 (1.1%) | 22 | 136 (0.5%) | 27 | 282 (0.9%) | 18 | Immunoglobulin C-2 type | |||||
| IPR001909 | 152 (0.8%) | 19 | 241 (0.7%) | 27 | 223 (1.1%) | 24 | 114 (0.4%) | 31 | 328 (1.1%) | 12 | KRAB box | |||||
| IPR005225 | 145 (0.8%) | 20 | 262 (0.8%) | 25 | 7 (0.0%) | 774 | 140 (0.5%) | 25 | 181 (0.6%) | 29 | Small GTP-binding protein domain | |||||
|
|
Total: 5804 (30.9%)
|
|
Total: 11,082 (32.3%)
|
|
Total: 8158 (39.5%)
|
|
Total: 5570 (21.5%)
|
|
Total: 7960 (25.7%)
|
|
|
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The top 20 InterPro entries with the highest number of protein matches for the reference proteome. The number of proteins matched for each InterPro entry and the percentage of proteome coverage that this number represents are displayed. The rank represents the position of each InterPro entry in the list ordered according to the number of protein matches
