Antisense Transcripts With FANTOM2 Clone Set and Their Implications for Gene Regulation

Table 1.

Number of Bidirectional Transcription Pairs per Chromosome


Chromosome

Number of sense-antisense transcript pair

Sense-antisense transcript pair loci/total loci (%)

Number of nonantisense transcription pair

Nonantisense transcription pair loci/total loci (%)

Total number of locia

Length of chromosomeb (bp)

Number of nonbidirectional transcription loci
1 133 12.5 59 5.5 2116 196842934 1732
2 225 16.9 79 5.9 2651 180335396 2043
3 128 14.5 32 3.6 1756 160564582 1436
4 134 14 48 5 1912 151730910 1548
5 154 14.4 71 6.6 2129 151006098 1679
6 138 13.8 69 6.9 1999 150316567 1585
7 183 15.9 62 5.4 2290 135793178 1800
8 143 16.8 40 4.7 1699 129321983 1333
9 136 15.1 52 5.7 1795 125583845 1419
10 123 14.9 42 5 1648 131187037 1318
11 207 17.4 51 4.3 2371 122883361 1855
12 107 15.6 34 4.9 1371 114251360 1089
13 93 13.4 39 5.6 1382 117315093 1118
14 96 14.6 45 6.8 1310 116006794 1028
15 90 14 34 5.2 1284 104633288 1036
16 75 12.7 33 5.6 1172 99184200 956
17 113 16 38 5.4 1407 94132929 1105
18 65 13.4 23 4.7 969 91189200 793
19 105 19.7 26 4.9 1061 61356199 799
X 33 6.3 22 4.2 1038 147161770 928
Total or average
2481
14.8
899
5.3
33360
2580796724
26600
  • a Loci number based on our mapping data of FANTOM2 clone set, RefSeq, and GenBank mRNA sequences

  • b Chromosome length based on v3 assembly of MGSC

This Article

  1. Genome Res. 13: 1324-1334

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