The List of Candidate Novel Cytokine Related Genes Represented in the FANTOM2 Data Set
|
|
Clone ID |
DDBJa |
cDNA library |
Similarityb |
Similar gene name |
|---|---|---|---|---|---|
| 1 | 1110004C05c | 18-day embryo | 89.8, 100.0 (145 AA) | Interferon-inducible protein (Rattus norvegicus). Identical to 1110004C05RIK protein (Q9CQW9) | |
| 1810060G19 | AK003507 | Pancreas | 89.1, 100.0 | ||
| 1810061A10 | Pancreas | 89.8, 100.0 | |||
| 2 | 4930507H06c | AK076846 | Testis | 73.1, 75.9 (145 AA) | Interferon-inducible protein (Rattus norvegicus). Identical to 4933438K12RIK protein (Q9D3R8) |
| 4933438K12 | Testis | 64.8, 89.0 | |||
| 3 | A330075D07c | AK039626 | Spinal cord | 52.8, 81.8 (145 AA) | Interferon-induced transmembrane protein 2 (interferon-inducible protein 1-8D) (Homo sapiens) |
| 4 | 1110036C17c | AK004121 | 18-day embryo | 72.9, 78.1 (145 AA) | Homolog to interferon-inducible protein |
| 5 | 2310061N23c | AK010014 | Tongue | 78.0, 97.6 (84 AA) | α-interferon inducible protein (fragment) (Mesocricetus auratus) |
| 6 | A430075K09c | AK040191 | N0 Thymus | 84.9, 100.0 (425 AA) | Interferon-activatable protein 205 (IFI-205), also known as D3 protein (Mus musculus). Contains PAAD/DAPIN/Pyrin domain (Pfam 02758) and the associated HIN-200/IF120x domain. |
| 9830003L02 | Bone | 77.3, 77.3 | |||
| 7 | 5330409J06c | Pituitary gland | 69.0, 93.6 | IF-induced GUANYLATE-BINDING PROTEIN 5 (Homo sapiens) | |
| 9530054H01 | AK030414 | U. bladder | 65.1, 29.3 | ||
| E030025M22 | N0 lung | 69.0, 93.6 (551 AA) | |||
| 8 | B430113A10c | AK080873 | Adipose | 87.6, 100.0 (123 AA) | Hypothetical Toll/Interleukin receptor TIR domain structure containing protein |
| 9 | 4732448K15c | Skin (Neonate 10 day) | 68.8, 100.0 (598 AA) | Interleukin-1 receptor-associated kinase 2 (Homo sapiens) | |
| 9130227N12 | AK028733 | Cecum | 75.5, 24.2 | ||
| 6330415L08 | Medulla oblongata | 64.9, 100.0 | |||
| 10 | E230031K19c | AK054215 | P2 oviduct | 76.3, 93.3 (556 AA) | Interleukin 20 receptor α isoform 3 (Homo sapiens) |
| 11 | 9830142A17 | Bone | 75.2, 99.8 (512 AA) | Transforming growth factor-β-inducible early growth response protein 2 (TGFβ-inducible early growth response protein 2) (TIEG-2) (Kreppel-like factor 11) (Homo sapiens) | |
| C330038O18 | ES cells | 75.0, 99.8 | |||
| C730023J20 | SV40T antigen transgenic | 75.4, 99.8 | |||
| D430010O15c | AK084913 | E13 | 75.0, 99.8 | ||
| A230003P18 | Hypothalamus | 75.2, 99.8 | |||
| D630011E14 | N0 kidney | 75.0, 99.8 | |||
| E230024J15 | P2 oviduct | 75.2, 99.8 | |||
| E430037H02 | (NOD)N2 Thymic cells | 75.1, 99.8 | |||
| 12 | 4921501K224c | AK076631 | Testis | 93.7, 100.0 (237 AA) | DJ977B1.4.1 (isoform 1) (TGIF2) (TGFβ-induced factor 2) (TALE family homeobox)) homolog (Homo sapiens) |
| 5730599O09 | Embryo 8 | 89.9, 100.0 | |||
| 13 | B930011D01c | AK047014 | N10 Cerebellum | 88.2, 84.4 (153 AA) | Integrin, β-like 1 (with EGF-like repeat domains) homolog (Mus musculus) |
| 14 | 2310046A13c | Tongue | 88.3, 26.7 | Latent transforming growth factor-β-binding protein 4S homolog (Homo sapiens) | |
| E330012C08 | AK054297 | P2 ovary | 88.8, 96.5 (1505 AA) | ||
| A730031D03 | N7 Cerebellum | 95.4, 32.5 | |||
| 15 | 9130025L13c |
AK033606
|
Cecum | 77.1, 99.5 (423 AA) | FGF receptor 4B (Homo sapiens) |
|
|
9530005F04
|
U. bladder
|
62.8, 99.5
|
|
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Thirty-one clones representing fourteen candidate new genes
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↵a DDBJ accession no. of the representative transcript
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↵b Similarity was defined by two parameters, first the percent identity and second the percent of the length of the reference sequence (similar-gene) having similarity to the FANTOM2 clone. The number in the parentheses in the SIMILARITY field shows the length of the alignment or the maximum length of multiple alignment. All clones were derived from the mouse strain C57BL/6, except for clone E430037H02, which was derived from NOD mouse
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↵c Representative transcripts
