Table 4.
Estimation of Transcriptional Starting Points Identified by 5′ EST Mapping
|
|
5′ ESTs extending the CDSs |
Clusters matching same genes |
Singletons that extend CDSs |
|---|---|---|---|
| TSP <100 nt longer on genome | 17,073 | 2350 | 42 |
| New TSP >100 bp longer on genome | 1669 | 516 | 29 |
| Single tissue type (1) | 4488 | 609 | 1269 |
| Multiple tissue type (1) | 224,934 | 7902 | n.a. |
| Single developmental stage (1) (2) | 16,418 | 1781 | 1269 |
| Multiple developmental stage (1) (2) | 213,509 | 6747 | n.a. |
| Single library ID | 2,078 | 269 | 1269 |
| Multiple Library ID | 227,849 | 8259 | n.a. |
| Total, >10 bp (longer) | 121,444 | 4934/8637 | 635 |
| Total, ±10 bp | 66,192 | 5115/8637 | 224 |
|
Total, <10 bp (shorter)
|
59,449
|
7030/8637
|
367
|
-
Only matches that extend existing CDS were considered
Reference mRNAs with complete CDS without hit are not shown
Clusters were prepared without using genome alignment and later aligned to the genome sequence
-
↵(1) Without taking into account library IDs 21, 23 and unrecognized mixed libraries
-
↵(2) Divided as preimplantation embryo, embryo after day 6, and adult
