Table 3.
Summary of STS-Derived SNPs by STS Set
|
STS set |
Count |
% successful amplifications |
Genes tagged |
High-quality bp |
SNPs |
SNPs/bp sequenced |
InDels |
|---|---|---|---|---|---|---|---|
| CAPS | 122 | 85 | 62 | 427,841 | 653 | 1:655 | 131 |
| TIGR | 89 | 96 | 53 | 320,807 | 609 | 1:527 | 69 |
| CYS | 56 | 85 | 26 | 185,588 | 254 | 1:731 | 67 |
| CHR4 | 48 | 90 | 24 | 177,132 | 449 | 1:395 | 43 |
| Je-1MB | 100 | 88 | 67 | 414,536 | 637 | 1:651 | 125 |
| Go-1MB | 111 | n/a | 55 | 477,476 | 829 | 1:576 | 134 |
| ATHA_EST | 48 | 97 | 43 | 208,490 | 309 | 1:675 | 47 |
| BDRUM_EST | 32 | 47 | 7 | 18,080 | 33 | 1:548 | 3 |
|
Total
|
606
|
88
|
337
|
2,236,318
|
3,773
|
1:595
|
619
|
