Table 2.
Summary of STS-Derived SNPs
|
Accession |
Sequence counta |
High-quality bp |
SNPs |
InDels |
SNPs/bpb |
% divergence to Col-0c |
|---|---|---|---|---|---|---|
| C24 | 472 | 212,757 | 1,006 | 158 | 1:212 | 0.734 |
| CS22491 | 452 | 213,646 | 988 | 171 | 1:216 | 0.749 |
| Cvi-0 | 492 | 213,234 | 1,186 | 217 | 1:180 | 0.895 |
| Ei-2 | 440 | 186,619 | 722 | 125 | 1:259 | 0.588 |
| Gü-0 | 470 | 218,942 | 727 | 138 | 1:301 | 0.542 |
| Ler | 486 | 216,760 | 1,057 | 184 | 1:206 | 0.751 |
| Lz-0 | 462 | 211,138 | 925 | 157 | 1:228 | 0.660 |
| Nd-1 | 473 | 214,844 | 829 | 157 | 1:259 | 0.641 |
| Wei-0 | 465 | 214,110 | 860 | 147 | 1:250 | 0.602 |
| Ws-0 | 299 | 133,947 | 568 | 115 | 1:236 | 0.684 |
| Yo-0 | 444 | 200,321 | 751 | 138 | 1:267 | 0.635 |
|
Total
|
4,995
|
2,236,318
|
3,773d
|
619d
|
n.d.e
|
0.680
|
-
↵a Consensus sequences assembled from individual sequence reads (both directions from PCR fragments were sequenced).
-
↵b SNPs from each accession in comparison to Col-0 are evaluated, which counts alleles identical in non-Col-0 accessions independently for each accession.
-
↵c Average percent divergence calculated from pairwise alignment with the Col-0 genome sequence.
-
↵d Due to redundancy of alleles, the overall number of SNPs and InDels is lower than the sum of SNPs from all accessions.
-
↵e (n.d.) Not determined.
