Table 5.
Summary of the Template Phrase Pattern Types
|
Pattern type/pattern example |
Example of sentence |
|---|---|
| Predicate verb | |
| NP1 activate NP2 | It has recently been reported that <rifampicin> activates the <glucocorticoid receptor>. |
| NP1 bind NP2 | We were able to confirm that <Tap> can indeed bind <p 15 specifically both in_vivo and in_vitro>. |
| NP1 induce NP2 | These results demonstrate that <TNF-alpha and IFN-gamma> induce <expression of functional FasL in adenocarcinoma cels>. |
| NP1 regulate NP2 | <Transfection-mediated expression of wild-type p53> has been shown to negatively regulate <basal promoter activity of MGMT in_vitro>. |
| NP interact | Further analysis confirmed that <Vav and Ly-GDI> interact both in_vitro and in_vivo assays. |
| etc. | |
| Predicate verb-preposition | |
| NP1 interact with NP2 | <Gadd45> was also able to physically interact with <Cdc2>. |
| NP1 bind to NP2 | Here we report that <PKR> binds to <p53>. |
| etc. | |
| Predicate verb-phrase | |
| NP1 form <[a-z]* complex with NP2> | We demonstrate that <Pap> forms <a stable complex with Pyk2>. |
| NP1 involve in <regulation of NP2> | Recent animal studies indicate that <leptin> is involved in the <regulation of blood pressure through the leptin receptor>. |
| NP1 be <[a-z]* substrate of NP2> | <HIP-55> were <direct substrates of caspase 3>. |
| NP1 play <[a-z]* role in NP2> | <Hsp90> plays an <important role in the rapid, estrogen receptor-mediated modulation of eNOS>. |
| NP1 regulate <[a-z]* through degradation of NP2> | Here we report that <Ubr1p, the main recognition component of this pathway>, regulates <peptide import in the yeast Saccharomyces cerevisiae through degradation of Cup9p, a 35 kDa homeodomain protein>. |
| NP1 serve as <inhibitor of NP2> | CHOP serves as an <inhibitor of the activity of C/EBP proteins>. |
| etc. | |
| Noun-phase | |
| Induction of NP1 by NP2 | It was concluded that the <induction of MCP-3 by IFN> is regulated differently in fibroblasts and PBMC. |
| Activation of NP1 by either NP2 or NP2' | <Activation of p38 by either opsonized zymosan or lgG-coated SRBC> was similar in wild-type and rac2 (-/-) cells. |
| Effect of NP1 on NP2 | The <effect of c-myc on down-regulation of Fas expression> was found. |
| Interaction between NP1 and NP2 | The <interaction between ILK and PINCH> has been consistently observed under a variety of experimental conditions. |
| Phosphorylation of NP1 through NP2 | These data suggest that SLF enhances <integrin-fibronectin-dependent tyrosine phosphorylation of pp 125FAK through activation of integrin>. |
| NP1 mediated NP2 | Here we demonstrate that an enhancer element can suppress the <P-Ph-mediated inhibition of yellow transcription>. |
| Binding of NP1 to NP2 | Phosphorylation of MAPK of the critical serine residue (Ser 127) of the Drosophila transcription factor Yan depends on Mae, and is mediated by the <binding of Yan to Mae through their Pointed domain>. |
|
etc.
|
|
-
NP1 and NP2 are noun-phrase including protein/gene/compound names.
< > shows the extended noun-phrase concerning information extraction.
Bold letters indicate protein/gene/compound names, and the underlined parts indicate template phrase patterns.
The articles and demonstrative pronouns are ignored in the pattern matching.
