Table 1.
Tag Mapping Accuracy Using Conceptual Transcripts Compared With Other Available Sequences
|
Test tags assigned to genes by mapping to... |
Tags mapped unambiguously |
Unambiguously mapped tags correctly assigned to genes |
|---|---|---|
| Full-length cDNAs (5606) | 99% | 100% |
| EST sequences (204,380) | 94% | 70% |
| Predicted protein coding sequences from genomic annotation (13,489) | 97% | 48% |
| Conceptual transcripts constructed from predicted protein coding sequences from genomic annotation, UTRs estimated (13,489) | 96% | 81% |
| Conceptual transcripts constructed from predicted protein coding sequences from genomic annotation, UTRs derived from EST data or estimated if ESTs unavailable (13,489) | 96% | 85% |
|
Conceptual transcripts constructed from predicted protein coding sequences from genomic annotation, UTRs derived from EST
and cDNA data or estimated if ESTs and cDNAs unavailable (13,489)
|
96%
|
93%
|
