LineUp: Statistical Detection of Chromosomal Homology With Application to Plant Comparative Genomics

Table 3.

Comparison of Methods at 1% Significance Implemented on the UMC98 Data Set

Reference method
Full D = 0 Full D = 1 Full D = 2 Fast D = 0 Fast D = 1 Fast D = 2
Full D = 0 0.79 0.78 1.00 0.77 0.80
Full D = 1 0.99 0.94 0.99 0.97 0.95
Full D = 2 0.91 0.87 0.91 0.84 0.95
Fast D = 0 0.99 0.78 0.77 0.76 0.79
Fast D = 1 0.99 0.99 0.93 0.99 0.95
Fast D = 2 0.95 0.90 0.98 0.95 0.88
  • Each column shows the proportion of overlap of the results from the reference method (column label) with the results from the compared method (row label). A value of 1.00 indicates that the reference method is a subset of the compared method.

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  1. Genome Res. 13: 999-1010

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