LineUp: Statistical Detection of Chromosomal Homology With Application to Plant Comparative Genomics

Table 2.

Chromosome Pairs Containing Colinear Runs Identified by Different Methods

Reference chromosome
1 2 3 4 5 6 7 8 9 10
1 a a a a
2 a a a
3 a a a
4 a a
5 a a
6 f
7 a g
8 a b c b
9 a d e
10 a a
  • Detected by all methods.

  • Detected by all methods except Full D = 0, Fast D = 0.

  • Detected by all methods except Full D = 0.

  • Detected by Full and Fast methods with D = 1.

  • Detected by Full with D = 2 and Fast methods with D = 1,2.

  • Detected by Full with D = 1.

  • Detected by Fast with D = 2.

This Article

  1. Genome Res. 13: 999-1010

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