Table 1.
Analysis of Random Data Constructed Under the Null Hypothesis of No Regional Homology
| No. marker pairs | 50 | 100 | 200 | 400 | ||||
| Method | no. | prop (SD) | no. | prop (SD) | no. | prop (SD) | no. | prop (SD) |
| Full D = 0 | 28 | 0.06 (0.07) | 72 | 0.05 (0.04) | 155 | 0.05 (0.02) | 382 | 0.05 (0.02) |
| Full D = 1 | 81 | 0.06 (0.05) | 350 | 0.05 (0.03) | 2201 | 0.05 (0.02) | 25,529 | 0.05 (0.01) |
| Full D = 2 | 165 | 0.05 (0.04) | 1053 | 0.05 (0.02) | 11,657 | 0.05 (0.02) | >106 | NA |
| FastRunD = 0 | 23 | 0.06 (0.08) | 54 | 0.06 (0.04) | 120 | 0.05 (0.03) | 293 | 0.05 (0.02) |
| FastRunsD = 1 | 64 | 0.06 (0.05) | 264 | 0.05 (0.03) | 1480 | 0.05 (0.02) | 11,596 | 0.05 (0.01) |
| FastRunsD = 2 | 126 | 0.05 (0.04) | 707 | 0.05 (0.02) | 5527 | 0.05 (0.02) | 61,921 | 0.05 (0.01) |
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↵Average number of identified runs, based on 100 data sets.
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↵Average proportion of significant runs, based on 100 data sets, under α = 0.05. For each of the 100 data sets, significance was based on 100 Monte Carlo simulations.
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↵NA indicates not available; analysis was terminated owing to lack of memory.
