Table 6.
Reclassification of Known Genes
| Gene symbol | Gene name | GenBank accession number | Predictions for the 23 broad cellular processes used for learning | Annotations to the 23 broad cellular processes used for learning |
| SEPP1 | Selenoprotein P, plasma, 1 | AA045003 | Transport, stress response | Stress response, transport |
| EPB41L2 | Erythrocyte membrane protein band 4.1-like 2 | W88572 | Cell proliferation | Cell proliferation |
| OA48-18 | Acid-inducible phosphoprotein | AA029909 | Cell proliferation | Cell proliferation |
| CTSK | Cathepsin K (pycnodysostosis) | AA044619 | Cell proliferation, protein metabolism and modification | Protein metabolism and modification |
| CPT1B | Carnitine palmitoyltransferase I, muscle | W89012 | Lipid metabolism | Lipid metabolism |
| CLDN11 | Claudin 11 (oligodendrocyte transmembrane protein) | N22392 | Cell proliferation, cell motility, cell adhesion, developmental processes | Cell adhesion, cell motility, cell proliferation, developmental processes |
| RPL5 | Ribosomal protein L5 | AA027277 | Protein metabolism and modification, cell organization and biogenesis | Protein metabolism and modification, cell organization and biogenesis |
| Homo sapiens clone 23785 mRNA sequence | N32247 | Lipid metabolism, cell adhesion, developmental processes | Cell adhesion | |
| ESTs, weakly similar toA45082 neurotrophic receptor ror1 precursor (H. sapiens) | T62968 | Cell surface receptor-linked signal transduction, cell death, oncogenesis | Cell surface receptor-linked signal transduction | |
| CCNG1 | Cyclin G1 | R45687 | Cell death, cell cycle, oncogenesis | Cell cycle, cell death |
| CDKN1C | Cyclin-dependent kinase inhibitor 1C (p57, Kip2) | R81336 | Cel cycle, oncogenesis | Cell cycle, cell proliferation |
| GRIA1 | Glutamate receptor, ionotropic, AMPA 1 | N47974 | Developmental processes, cell surface receptor-linked signal transduction, cell death | Cell death, cell surface receptor-linked signal transduction |
| Homo sapiens mRNA for KIAA1888 protein, partial cds | H26264 | Transport, cell surface receptor-linked signal transduction, cell death, intracellular signaling cascade | Transport | |
| FMOD | Fibromodulin | AA029408 | Transport, cell adhesion, cell organization and biogenesis, cell surface receptor-linked signal transduction, cell cycle | Cell adhesion |
| CDK5R1 | Cyclin-dependent kinase 5, regulatory subunit 1 (p35) | R49183 | Cell proliferation, lipid metabolism, cell cycle | Cell proliferation, cell cycle |
| CAT | Catalase | W89002 | Stress response, transcription, oncogenesis | Stress response |
| Homo sapiens, clone MGC: 16131 IMAGE: 3628944, mRNA, complete cds | R71462 | Transport, intracellular signaling cascade | Transport, intracellular signaling cascade | |
| ESTs, moderately similar to JX0336 succinate dehydrogenase (H. sapiens) | R60996 | Lipid metabolism, intracellular signaling cascade, energy pathways | Energy pathways, lipid metabolism | |
| GBAS | Glioblastoma amplified sequence | T90846 | Lipid metabolism, cell surface receptor-linked signal transduction | Cell surface receptor-linked signal transduction |
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Reclassifications for some of the known genes in the data set are shown. A full record of reclassifications for all known genes is provided in Supplemental Material (available online athttp://www.genome.org).
