Table 5.
Classifications Obtained With the Model
| Process | Annotate genes | Reclassifications for known genes (correct) | Classifications for unknown genes |
| Ion homeostasis | 4 | 4 (4) | 4 |
| Protein targeting | 6 | 8 (6) | 2 |
| Blood coagulation | 10 | 13 (10) | 34 |
| DNA metabolism | 19 | 33 (19) | 28 |
| Intracellular signaling cascade | 26 | 39 (25) | 14 |
| Energy pathways | 6 | 6 (6) | 0 |
| Cell cycle | 47 | 66 (44) | 38 |
| Oncogenesis | 17 | 41 (17) | 31 |
| Circulation | 15 | 17 (15) | 3 |
| Cell death | 16 | 22 (16) | 26 |
| Developmental processes | 15 | 23 (15) | 21 |
| Transcription | 52 | 61 (47) | 88 |
| Defense (immune) response | 37 | 44 (32) | 20 |
| Cell adhesion | 30 | 32 (29) | 19 |
| Stress response | 17 | 26 (17) | 22 |
| Protein metabolism and modification | 33 | 45 (33) | 35 |
| Cell motility | 32 | 40 (29) | 21 |
| Cell surface receptor linked signal transduction | 27 | 38 (26) | 34 |
| Lipid metabolism | 26 | 44 (25) | 45 |
| Transport | 22 | 30 (22) | 19 |
| Cell organization and biogenesis | 33 | 40 (30) | 13 |
| Cell proliferation | 53 | 60 (46) | 30 |
| Amino acid and derivative metabolism | 6 | 6 (6) | 2 |
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Summary of reclassification of known genes and classification of unknown genes to the 23 broad biological function classes by using the model evaluated in Table 4.
