Table 2.
Known Transcription Factor Binding Sites That Have a Significant Overlap Score
| Transcription factors | References | Observed genes | Consensus | KEGG | Cellzome | MDS |
| MET 31/32 | (Blaiseau et al. 1997) | Methionine biosynthesis | AAACTGTG | 5.25 | 1.46 | 0.96 |
| HAP2 | (Mantovani 1998) | Oxidative phosphorylation | ACCAAT.A | 6.51 | 0.11 | 1.36 |
| GRF2/REB1 | (Chasman et al. 1990) | Unknown | [TC]..[TC][TC]ACCCG | 1.88 | 4.62 | 3.45 |
| [TC]..[TC][TC]ACCCT | 1.27 | 2.82 | 4.38 | |||
| PHO4 | (Hayashi and Oshima 1991) | Met, Thr, Asn synthesis | CACGTG | 6.36 | 1.95 | 1.94 |
| MBP1/MBF1 | (Lowndes et al. 1991) | DNA replication | ACGCGT.A | 4.41 | 4.74 | 3.81 |
| RPN4p | (Mannhaupt et al. 1999) | Proteasome | GGTGGCAAA | 0.33 | 11.62 | 13.46 |
| GCN4 | (Hope and Struhl 1985) | Amino acids synthesis | TGACTCA | 8.66 | 3.39 | 2.87 |
| CBF1 | (Dowell et al. 1992) | Unknown | TCAC.TGA | 5.21 | 0.5 | 1.23 |
| TFIID-TBP | (Struhl 1995) | Unknown | TATATAAA | 4.91 | 1.39 | 3.61 |
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The values are the standard deviations from the mean of random overlap score. Values in bold are significant. The “Observed gene” column is a functional annotation based on the overlap gene annotations.
