The Phylogenetic Extent of Metabolic Enzymes and Pathways

Table 1.

The 13 Metabolic Enzymes Which Have Homologs in All Major Taxonomic Partitions, Including Viruses

Accession Description Pathway
P00379 Dihydrofolate reductase (EC 1.5.1.3) FormylTHF biosynthesis, folic acid biosynthesis
P00470 Thymidylate synthase (EC2.1.1.45) FormylTHF biosynthesis, deoxypyrimidine nucleotide/side metabolism
P00479 Aspartate carbamoyltransferase catalytic chain  (EC 2.1.3.2) Pyrimidine biosynthesis
P00861 Diaminopimelate decarboxylase (EC4.1.1.20) Lysine and diaminopimelate biosynthesis
P04391 Ornithine carbamoyltransferase chain I (EC2.1.3.3) Arginine biosythesis II
P05459 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.-) Pyridoxal 5′-phosphate biosynthesis
P06960 Ornithine carbamoyltransferase chain F (EC2.1.3.3) Arginine biosynthesis II
P08328 D-3-phosphoglycerate dehydrogenase (EC1.1.1.95) Serine biosynthesis
P17169 Glucosamine-fructose-6-phosphate aminotransferase  [isomerizing] (EC 2.6.1.16) Dissimilation of N-acetylglucosamine, N-acetylmannosamine and  N-acetylneuraminic acid, UDP-N-acetylglucosamine biosynthesis
P22939 Geranyltranstransferase (EC2.5.1.10) Polyisoprenoid biosynthesis
P27830 DTDP-glucose 4,6-dehydratase (EC 4.2.1.46) dTDP-rhamnose biosynthesis, enterobacterial common antigen  biosynthesis
P37759 DTDP-glucose 4,6-dehydratase (EC4.2.1.46) dTDP-rhamnose biosynthesis, enterobacterial common antigen  biosynthesis
P52643 D-lactate dehydrogenase (EC1.1.1.28) Fermentation
  • Column names: database Accession number, database Description line, both from SwissProt (Bairoch and Apweiler 2000) and the corresponding Pathway name, according to EcoCyc (Karp et al. 2000). Note that an enzyme may participate in more than one pathway (Ouzounis and Karp 2000). Table is sorted by Accession number.

This Article

  1. Genome Res. 13: 422-427

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