Genomic Sequence and Transcriptional Profile of the Boundary Between Pericentromeric Satellites and Genes on Human Chromosome Arm 10p

Table 3.

Tandem Repeats >300 bp in 10q11

Position in 10p11 sequence Shortest high scoring periodicity No. of repeats % matches % indels Consensus length of other periodicities Repeat sequ repeat na
(1-25435)   5bp 1001.4 70 0 10bp/26/98bp GGAAT Sate
(168190-170696)   5bp 487.8 66 21 13bp/18/23bp CATTT
(207701-285997)   5bp 1000.4 53 15 10bp/15bp etc. GGAAT Sate
1-46495   5bp 995.8 69 4 10bp/15bp etc. GGAAT Sate
79169-80644 49bp 30.3 92 1
170593-170958 121bp 3 87 2
  • Tandem repeats were identified with Tandem Repeat Finder using both stringent and relaxed search parameters (Benson 1999). Because repeat arrays are not homogeneous, a number of details are shown. The position in the sequence (column 1) indicates the extent of the entire array. The No. of repeats, % match, and % indels (columns 3–5) refer to the region defined by the shortest high scoring periodicity and not the entire array. Significant higher order periodicities are also shown, with the highest scoring periodicity being underlined and embolden. The 121bp repeat includes a 36bp Alu fragment. The sequence of the 49bp repeat is: GGCCGGTGTGAGGCAAGGGGCTCACGCTGACCTCTGTCAGCGT GGGAGG.

This Article

  1. Genome Res. 13: 159-172

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