Analysis and Functional Annotation of an Expressed Sequence Tag Collection for Tropical Crop Sugarcane

Table 5.

Tissue-Enriched SAS


Number of ESTs

Specific SAS

Best BLAST match

Library
360 1 (Y17556) α-kafirin [Sorghum bicolor] SD
103 1 (A23207) zein zA1 [Zea mays] SD
76 1 (Y17555) α-kafirin [Sorghum bicolor] SD
54 1 (AF090447) zp22/D87 [Zea mays] SD
49 1 (X57831) α-coixin 27 kDA [Coix lacryma-jobi] SD
43 1 (Y17556) α-kafirin [Sorghum bicolor] SD
42 1 (AF232008) β-glucosidase aggregating factor precursor [Zea mays] RT
38 1 (Y17556) α-kafirin [Sorghum bicolor] SD
35 1 (1107201B) zein A20 [Zea mays] SD
35 1 (X16101) kafirin preprotein [Sorghum bicolor] SD
34 1 (X53582) 19 kD zein [Zea mays] SD
32 1 No match SD
31 1 (S51798) γ-kafirin precursor [Sorghum bicolor] SD
28 1 (X79885) β-coixin [Coix lacryma-jobi] SD
26 1 No match SD
25 1 (V01475) reading frame zein [Zea mays] SD
24 1 (AC007789) putative low molecular early light-inducible protein [Oryza sativa] SD
24 1 (1906392A) thaumatin-like protein [Zea mays] SD
22 1 (M12144) 19kDa zein protein [Zea mays] and (AP002820) putative peroxidase [Oryza sativa] SD
22 1 (AP002820) putative peroxidase [Oryza sativa] RT
21 1 (X16101) kafirin preprotein [Sorghum bicolor] SD
21 1 (X63113) α-coixin [Coix lacryma-jobi] SD
19 1 (X56337) α-amylase [Oryza sativa] CL
19 1 No match SD
18 1 (AP000374) Cyclopropane fatty acid synthase [Arabidopsis thaliana] FL
17 1 No match SD
16 1 No match SD
16 1 Unknown [Triticum aestivum] RT
14 2 No match and (AB018375) OsENOD93a gene for early nodulin [Oryza sativa] SD, RT
13 4 S.M. SD, FL, RT
12 6 S.M. SD, RT, HR, FL
11 4 S.M. RT, CL, FL
10 5 S.M. SD, FL, ST
9 8 S.M. S.M.
8 8 S.M. S.M.
7 19 S.M. S.M.
6 42 S.M. S.M.
5 86 S.M. S.M.
4 205 S.M. S.M.
3
815
S.M.
S.M.
  • Tissue-specific SASs were ordered by the number of ESTs they contained. The best BLAST match for each tissue-enriched SAS is also shown, as well as their tissue of origin. Additional information on tissues-enriched SAS is available in the Supplemental Material (S.M.).

This Article

  1. Genome Res. 13: 2725-2735

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