Analysis and Functional Annotation of an Expressed Sequence Tag Collection for Tropical Crop Sugarcane

Table 1.

SUCEST cDNA Librariesa


Library

Source

Sugarcane variety
ADI Root-shoot transition zone, stalk and apical meristem of Plantlets maintained in vitro inoculated with Gluconacetobacter diazotroficans SP70-1143b
AM1 Apical meristem and surrounding tissues of mature plants SP80-3280c
AM2 Apical meristem and surrounding tissues of immature plants SP80-3280c
CL6 Pool of sugarcane calli submitted to low (4°C) and high (37°C) temperature stress SP80-3280d
FL1 Inflorescence at beginning of development (1 cm long) SP80-87432d
FL3 Base of developing inflorescence (5 cm long) PB5211 × P57150-4d
FL4 Developed inflorescence and rachis (20 cm long) PB5211 × P57150-4d
FL5 Developed inflorescence (20 cm long) without rachis PB5211 × P57150-4d
FL8 Developing inflorescence and rachis (10 cm long) SP80-87432d
HR1 Root-shoot transition zone, stalk and apical meristem of plantlets maintained in vitro inoculated with Herbaspirilum rubrisubalbicans SP70-1143d
LB1 Lateral buds from field-grown adult plants SP80-3280c
LB2 Lateral buds from adult plants grown in a greenhouse SP80-3280d
LR1 Leaf roll from field-grown adult plants (large insert library) SP80-3280d
LR2 Leaf roll from field-grown adult plants (small insert library) SP80-3280d
LV1 Etiolated leaves from plantlets grown in vitro SP83-5077, SP80-185, SP87-396, SP80-3280, SP80-3280 × SP81-5441d
RT1 Root tips (1—3 cm long) from adult plants (large insert library) SP80-3280d
RT2 Root tips (1—3 cm long) from adult plants (small insert library) SP80-3280d
RT3 Root apex from the stalk button of adult plants SP80-3280c
RZ1 Shoot—root transition zone from adult plants (large insert library) SP80-3280c
RZ2 Shoot—root transition zone from adult plants (small insert library) SP80-3280c
RZ3 Shoot—root transition zone from young plants SP80-3280c
SB1 Stalk bark from undeveloped, upper part of adult plants SP80-3280c
SD1 Developing seeds (large insert library) CB47-89, RB855205, RB845298, RB805028e
SD2 Developing seeds (small insert library) CB47-89, RB855205, RB845298, RB805028e
ST1 First apical stalk internode of adult plants SP80-3280d
ST3
Fourth apical stalk internode of adult plants
SP80-3280d
  • a Standard cDNA libraries were constructed from a range of tissues sampled from plants at different developmental stages and grown in vitro, in a greenhouse, or in the field. All sugarcane varieties used are derived from commercial hybrids (S. spontaneum × S. officinarum). The library code, the tissue source, and the variety used are indicated. Plants were grown at the locations indicated in footnotes b—e

  • b Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ

  • c Universidade Estadual de Campinas, Campinas, SP

  • d Copersucar Experimental Station, Piracicaba, SP

  • e Universidade Federal de Alagoas Experimental Station, Serra do Ouro, AL

This Article

  1. Genome Res. 13: 2725-2735

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