Table 2.
Cross-Validation for the Discrimination Between Genes and Pseudogenes from KA/KS Benchmark Distributions
|
Known test fractions |
Training set |
Estimated fractions of pseudogenes |
||||||
|---|---|---|---|---|---|---|---|---|
| Functional |
Pseudogene |
Functional |
Pseudogene |
Averagea |
SDb |
|||
| 1000 | 0 | 659 | 1703 | 16.1 | 15 | |||
| 900 | 100 | 759 | 1603 | 109.6 | 24.8 | |||
| 800 | 200 | 859 | 1503 | 205.4 | 20.5 | |||
| 700 | 300 | 959 | 1403 | 310.2 | 23.7 | |||
| 600 | 400 | 1059 | 1303 | 401.9 | 19.7 | |||
| 500 | 500 | 1159 | 1203 | 500.8 | 21.3 | |||
| 400 | 600 | 1259 | 1103 | 600.5 | 24.2 | |||
| 300 | 700 | 1359 | 1003 | 694.7 | 24.1 | |||
| 200 | 800 | 1459 | 903 | 793.2 | 26.1 | |||
| 100 | 900 | 1559 | 803 | 893.2 | 26.4 | |||
| 0
|
1000
|
1659
|
703
|
983.9
|
20
|
|||
