AVID: A Global Alignment Program

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Figure 2.
Figure 2.

Finding maximal matches using a suffix tree: The suffixes of the word at the root are represented by the characters along the paths from the root to the leaves. Branchings in the tree correspond to locations where different suffixes shared the same prefix, and therefore are matches. Every internal node in the tree is therefore a match (with the matching sequence corresponding to the path characters along the path from the root). Maximal matches can be efficiently detected by considering some additional criteria.

This Article

  1. Genome Res. 13: 97-102

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