Strategies and Tools for Whole-Genome Alignments

Table 3.

Specificity Test: Coverage on Human Chromosome 20 Only By All the Mouse Chromosomes Except Chromosome 2

Matrix loose threshold = 2500 Matrix medium threshold = 2500 Matrix tight threshold = 3400
Overall coverage 0.49% 0.29% 0.22%
Features coverage
Exons 5.57% 5.36% 5.06%
UTR 3.85% 2.71% 1.84%
Upstream 500 0.10% 0.09% 0.08%
Upstream 200 0.24% 0.22% 0.19%
Upstream 100 0.46% 0.43% 0.35%
Downstream  200 1.59% 0.91% 0.23%

This Article

  1. Genome Res. 13: 73-80

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