Strategies and Tools for Whole-Genome Alignments

Table 2.

Percentage of Base Pairs Covered for Known Coding and Non-Coding Functional Features of the Human Genome

Matrix loose threshold = 2500 Matrix medium threshold = 2500 Matrix loose threshold = 3400
Overall coverage 22.15% 7.26% 4.48%
Feature coverage
Exons 90.93% 88.19% 85.76%
UTR 72.21% 34.43% 23.96%
Upstream 500 56.08% 23.35% 15.19%
Upstream 200 65.94% 33.01% 22.61%
Upstream 100 70.83% 38.94% 27.38%
Downstream  200 53.42% 17.62% 10.85%

This Article

  1. Genome Res. 13: 73-80

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