Comparative Gene Prediction in Human and Mouse

Table 4.

Accuracy of Gene-finding Programs on Human Chromosome 22

Program Nucleotide Exon Gene
Sn Sp CC Sn Sp (Sn+Sp)/2 ME WE Sn Sp (Sn+Sp)/2 MG WG JG SG
GENSCAN 0.86 0.50 0.64 0.70 0.40 0.55 0.13 0.50 0.06 0.04 0.05 0.11 0.45 1.24 1.07
GENOMESCAN 0.87 0.44 0.59 0.72 0.36 0.54 0.10 0.55 0.11 0.06 0.08 0.12 0.52 1.07 1.14
GENEID 0.80 0.63 0.69 0.66 0.53 0.59 0.19 0.35 0.09 0.07 0.08 0.14 0.39 1.20 1.08
TBLASTX 0.84 0.39 0.54 — — — 0.12 0.74 — — — 0.11 — — —
SGP2 0.83 0.67 0.73 0.68 0.56 0.62 0.16 0.31 0.13 0.10 0.11 0.14 0.36 1.14 1.13

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  1. Genome Res. 13: 108-117

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