Comparative Gene Prediction in Human and Mouse

Table 1.

Gene Prediction in the SCIMOG Data Set

Program Nucleotide Exon
Sn Sp CC Sn Sp (Sn+Sp)/2 ME WE
GENSCAN 0.98 0.86 0.92 0.84 0.75 0.79 0.04 0.14
TBLASTX default 0.89 0.76 0.81 0.81 — — 0.19 0.11
SGP2 (single complete genes) 0.97 0.98 0.97 0.89 0.89 0.89 0.03 0.03
SGP2 (multiple genes) 0.94 0.97 0.95 0.80 0.87 0.83 0.10 0.02

This Article

  1. Genome Res. 13: 108-117

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