Table of Contents

REVIEW

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Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution
- Ross C. Hardison,
- Krishna M. Roskin,
- Shan Yang,
- Mark Diekhans,
- W. James Kent,
- Ryan Weber,
- Laura Elnitski,
- Jia Li,
- Michael O'Connor,
- Diana Kolbe,
- Scott Schwartz,
- Terrence S. Furey,
- Simon Whelan,
- Nick Goldman,
- Arian Smit,
- Webb Miller,
- Francesca Chiaromonte,
- and David Haussler
Genome Res. January 1, 2003 13: 13-26; doi:10.1101/gr.844103
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Reevaluating Human Gene Annotation: A Second-Generation Analysis of Chromosome 22
- John E. Collins,
- Melanie E. Goward,
- Charlotte G. Cole,
- Luc J. Smink,
- Elizabeth J. Huckle,
- Sarah Knowles,
- Jacqueline M. Bye,
- David M. Beare,
- and Ian Dunham
Genome Res. January 1, 2003 13: 27-36; Published in Advance December 30, 2002, doi:10.1101/gr.695703
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Genome Rearrangements in Mammalian Evolution: Lessons From Human and Mouse Genomes
- Pavel Pevzner and
- Glenn Tesler
Genome Res. January 1, 2003 13: 37-45; Published in Advance December 30, 2002, doi:10.1101/gr.757503

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The Phusion Assembler
- James C. Mullikin and
- Zemin Ning
Genome Res. January 1, 2003 13: 81-90; Published in Advance December 30, 2002, doi:10.1101/gr.731003
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Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2
- David B. Jaffe,
- Jonathan Butler,
- Sante Gnerre,
- Evan Mauceli,
- Kerstin Lindblad-Toh,
- Jill P. Mesirov,
- Michael C. Zody,
- and Eric S. Lander
Genome Res. January 1, 2003 13: 91-96; doi:10.1101/gr.828403
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AVID: A Global Alignment Program
- Nick Bray,
- Inna Dubchak,
- and Lior Pachter
Genome Res. January 1, 2003 13: 97-102; Published in Advance December 30, 2002, doi:10.1101/gr.789803
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Human–Mouse Alignments with BLASTZ
- Scott Schwartz,
- W. James Kent,
- Arian Smit,
- Zheng Zhang,
- Robert Baertsch,
- Ross C. Hardison,
- David Haussler,
- and Webb Miller
Genome Res. January 1, 2003 13: 103-107; Published in Advance December 30, 2002, doi:10.1101/gr.809403
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Comparative Gene Prediction in Human and Mouse
- Genı́s Parra,
- Pankaj Agarwal,
- Josep F. Abril,
- Thomas Wiehe,
- James W. Fickett,
- and Roderic Guigó
Genome Res. January 1, 2003 13: 108-117; doi:10.1101/gr.871403
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Multiple Cross and Inbred Strain Haplotype Mapping of Complex-Trait Candidate Genes
- Yeong-Gwon Park,
- Robert Clifford,
- Kenneth H. Buetow,
- and Kent W. Hunter
Genome Res. January 1, 2003 13: 118-121; doi:10.1101/gr.786403