Temperature-Regulated Transcription in the Pathogenic Fungus Cryptococcus neoformans

Table 4.

B3501 Tags More Highly Expressed at 25°C

SAGE tag B3501 25 25 normalized B3501 37 FOLD difference Preliminary gene designation E-value Accession no.of BLASTx
Genomic BLASTx EST BLASTx
caagtaattt 293 69 11 6.3 NO HITS
gaacgatgct 607 143 56 2.6 NO HITS
aaagcgcgtt 151 35 3 11.7 Inositol 1-phosphate synthase 1.00E-144 Pichia pastoris AF078915
catttacata 546 128 57 2.2 NO HITS
gacgatatat 204 48 9 5.3 C-4 methyl sterol oxidase 2.00E-84 2.00E-48 Schizosaccharomyces pombe AL109832
gctctccagg 250 59 15 3.9 Histone H3 2.00E-48 9.00E-64 Mortierella alpina AJ249812
cgagtcgtat 539 127 62 2.0 Iron permease 2.00E-23 S. pombe Z67998
cagagatgtg 197 46 14 3.3 Nonhistone protein 1.00E-06 7.00E-09 Saccharomyces cerevisiae Z94864
tatctgaaag 93 22 2 11.0 Delayed-type hypersensitivity antigen 1.00E-103 Cryptococcus neoformans AF246128
cattcggttt 60 14 0 unique to 25 NO HITS
gtattgaccc 430 101 52 1.9 Phosphoketolase 1.00E-165 1.00E-106 Lactococcus lactis AE006381
tgatgggaag 57 13 0 unique to 25 Sterol C-5-desaturase 1.00E-56 Rattus norvegicus AB052846
tcgagaatgg 218 51 19 2.7 NO HITS
aattcgcttt 133 31 8 3.9 14-3-3-Protein 5.00E-84 1.00E-124 Schizophyllum commune AY029473
tatatgtgta 79 19 2 9.5 Heat shock protein 12 7.50E-02 4.00E-12 S. cerevisiae X55785
ataaaaaaaa 159 37 12 3.1 NO HITS
tgaaaatata 62 15 1 15.0 Δ9 fatty acid desaturase 1.00E-136 1.00E-111 Mortierella alpina Y18553
tacttttttt 108 25 6 4.2 NO HITS
tatcccacca 99 23 5 4.6 NO HITS
atgatttgag 77 18 3 6.0 NO HITS
cctcaacggc 101 24 6 4.0 NO HITS
gaactggcgg-3′ 37 9 0 unique to 25 Adenosyl homocysteinase 0.00E + 00 2.00E-40 S. pombe AB004537
agtgctgctg 63 15 2 7.5 Histone H1 1.10E-02 S. cerevisiae U43703
caaaaaggat 63 15 2 7.5 NO HITS
tcaaagaaga 62 15 2 7.5 NO HITS
ctgaggctga 50 12 1 12.0 NO HITS
ggcttgacca 50 12 1 12.0 High-affinity monosaccharide transporter 9.00E-30 8.00E-48 Amanita muscaria Z83828
ccggctaatg 117 27 9 3.0 NO HITS
ctgtatgtcc 34 8 0 unique to 25 NO HITS
accttgatgg 78 18 4 4.5 NO HITS
gacttttgac 94 22 6 3.7 NO HITS
tctggtcgag 187 44 20 2.2 Histone H4 7.00E-19 2.00E-38 Agaris bisporus P35058
ggcatttagt 32 8 0 unique to 25 NO HITS
attggtttga 32 8 0 unique to 25 NO HITS
gctaacgctg 238 56 29 1.9 Cyclophilin A 5.00E-76 2.00E-91 C. neoformans AF333996
ttcgcgctaa 66 16 3 5.3 NO HITS
caagcagata 45 11 1 11.0 Fatty acid synthase α-chain 1.00E-68 S. pombe D83412
tatccgggtc 72 17 4 4.3 Aspartate aminotransferase 6.00E-89 Homo sapiens M22632
tctaacccta 28 7 0 unique to 25 Hmp1 of U. maydis 1.00E-14 1.00E-22 Ustilago maydis U39049
cacattgata 70 16 4 4.0 NO HITS
cctgcgagac 27 6 0 unique to 25 NO HITS
tcataaagca 26 6 0 unique to 25 NO HITS
tatatccatt 26 6 0 unique to 25 NO HITS 2.00E-71
tatcatccgt 26 6 0 unique to 25 Myo-inositol transporter A 9.00E-59 N. crassa AL390218
tatgatgttt 26 6 0 unique to 25 NO HITS
catctattcc 286 67 40 1.7 NO HITS
tatttgttgt 25 6 0 unique to 25 DNA-directed RNA polymerase II 1.00E-91 S. pombe D13337
ttagcgacag 25 6 0 unique to 25 NO HITS
gtttaatcaa 24 6 0 unique to 25 COPII-coated vesicle component 3.00E-18 7.00E-19 S. pombe AL109831
aatgactttt 427 100 68 1.5 NO HITS
tctttgatgt-5′ 328 77 49 1.6 ADP, ATP carrier protein 1.00E-133 2.00E-72 Gossypium hirsutum AF006489
tgtcataaaa 23 5 0 unique to 25 NO HITS

  • 3′ or 5′ denotes that a second serial analysis of gene expression (SAGE) tag was found and that the tag is either the 3′ most tag or more 5′. Tags in this table are differentially expressed with a statistic significance of P < 0.05.

  • ↵Tag did not have a corresponding contig at Stanford and did not have a corresponding expressed sequence tag (EST) at Oklahoma.

  • ↵No significant BLAST hit results for the genomic or EST sequence associated with the SAGE tag.

This Article

  1. Genome Res. 12: 1386-1400

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