Table 3A.
Top 50 Tags Expressed at 25°C for Strain B3501
| SAGE tag | Frequency (65,399 total) | Percentage | Preliminary gene designation | E-value of top BLASTx result | Accession no.of BLASTx |
| gaacgatgct | 607 | 0.93% | NO HITS | ||
| catttacata | 546 | 0.83% | NO HITS | ||
| cgagtcgtat | 539 | 0.82% | Iron permease | 2E-23 | Schizosaccharomyces pombe Z67998 |
| cgacagaccg | 529 | 0.81% | Translation elongation factor 1 | 0.0/0.0 | Cryptococcus neoformans U81804 |
| aaaaaaaaaa | 452 | 0.69% | NO HITS | ||
| gtattgaccc | 430 | 0.66% | Phosphoketolase | 1.00E-165/1.00E-106 | Lactococcus lactis AE006381 |
| aatgactttt | 427 | 0.65% | NO HITS | ||
| gcgttacttg | 348 | 0.53% | Zinc transporter | 2E-27 | Saccharomyces cerevisiae Z72777 |
| tctttgatgt-3′ | 328 | 0.50% | ADP, ATP carrier protein | 1.00E-110/2.00E-72 | Gossypium hirsutum AF006489 |
| gtcgtagagt | 327 | 0.50% | Enolase | 1E-131 | S. cerevisiae J01322 |
| atatgacata | 305 | 0.47% | Glycine dehydrogenase | 0 | S. pombe Z54308 |
| caagtaattt | 293 | 0.45% | NO HITS | ||
| catctattcc | 286 | 0.44% | NO HITS | ||
| ccagaagttg | 267 | 0.41% | Mitochondrial thioredoxin | 2E-39/2.00E-54 | S. cerevisiae X59720 |
| ttcggcaagg-5′ | 264 | 0.40% | ADP, ATP carrier protein | 1.00E-115/1.00E-132 | G. hirsutum AF006489 |
| ctccgccgag | 261 | 0.40% | Pyruvate decarboxylase | 1.00E-72/3.00E-40 | Pichia stipitis U75310 |
| gctctccagg | 250 | 0.38% | Histone H3 | 1.00E-48/9.00E-64 | Mortierella alpina AJ249812 |
| gctaacgctg | 238 | 0.36% | Cyclophilin A | 5.00E-76/2.00E-91 | C. neoformans AF333996 |
| gtcggtggta | 230 | 0.35% | ATP synthase—β-chain | 0.0/3.00E-43 | Kluyveromyces lactis U37764 |
| tcgagaatgg | 218 | 0.33% | NO HITS | ||
| gacgatatat | 204 | 0.31% | C-4 methyl sterol oxidase | 2E-84/2.00E-48 | S. pombe AL109832 |
| cagagatgtg | 197 | 0.30% | Nonhistone protein | 1.00E-6/7.00E-9 | S. cerevisiae Z94864 |
| tctggtcgag | 187 | 0.29% | Histone H4 | 7.00E-19/2.00E-38 | Phanerochaete chrysosporium Z15134 |
| aggaagagaa | 186 | 0.28% | Hypothetical protein | 2.00E-22/5.00E-05 | Agaricus bisporus AJ271701 |
| cgcggaaagg | 184 | 0.28% | NO HITS | ||
| aaatggtttg | 183 | 0.28% | NO HITS | ||
| tagccgggaa | 182 | 0.28% | NO HITS | ||
| tccttccgag | 179 | 0.27% | GAPDH | 1.00E-112/0.0 | C. neoformans AF106950 |
| atttccgccg | 178 | 0.27% | Serine-threonine protein kinase | 7E-65 | Mus musculus U48737 |
| cacgttcacg | 168 | 0.26% | Thioredoxin peroxidase | 2.00E-39/2.00E-64 | S. pombe AL031798 |
| ataaaaaaaa | 159 | 0.24% | NO HITS | ||
| catattgaat | 157 | 0.24% | Uracil ribosyl transferase | 3.00E-10 | S. pombe Z98598 |
| gcagatcgat | 154 | 0.24% | 60S ribosomal protein RPL39 | 3.00E-09/1.00E-13 | K. marxianus S53434 |
| gctcctctta | 152 | 0.23% | ATP synthase—α-chain | 2.00E-58/9.00E-46 | S. pombe M57955 |
| aaagcgcgtt | 151 | 0.23% | Inositol 1-phosphate synthase | 1E-144 | Pichia pastoris AF078915 |
| agtcctcttc | 150 | 0.23% | 60S ribosomal protein RPP2 | 1.00E-15 | Alternaria alternata U87806 |
| actaccttct | 149 | 0.23% | Ribosomal protein RPP1 | 1E-13 | C. elegans AF003139 |
| ccatatgttt | 149 | 0.23% | Glycogen phosphorylase | 6.00E-95/2.00E-40 | Dictyostelium discoideum M77492 |
| actatcgcct | 142 | 0.22% | Ubiquitin conjugating enzyme | 8.00E-45/2.00E-75 | Glomerella cingulata AF030296 |
| cagcagttta | 139 | 0.21% | NO HITS | ||
| agtggcagtt | 138 | 0.21% | Opsin | 0.004/3.00E-21 | Leptosphaeria maculans AF290180 |
| cattcgttca | 137 | 0.21% | NO HITS | ||
| aattcgcttt | 133 | 0.20% | 14-3-3 Protein | 5.00E-84/1.00E-124 | Schizophyllum commune AY029473 |
| tagcctttcg | 127 | 0.19% | NO HITS | ||
| cgtgaggctg | 125 | 0.19% | 6-Phosphogluconate dehydrogenase | 1.00E-170/0.0 | |
| catacaggtc | 122 | 0.19% | Glutamine synthase | 1.00E-133/1.00E-163 | A. bisporus Y12704 |
| ggttacgctg | 121 | 0.19% | Mitochondrial malate dehydrogenase | 1.00E-115 | S. cerevisiae J02841 |
| taacgcataa | 117 | 0.18% | NO HITS | ||
| ccggctaatg | 117 | 0.18% | NO HITS | ||
| acatcgatct | 117 | 0.18% | 60S ribosomal protein RPL31 | 3E-25 | Cyanophora paradoxa AJ005204 |
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↵Serial analysis of gene expression (SAGE) tag does not have an associated genomic contig at Stanford or expressed sequence tag (EST) at http://www.genome.ou.edu/cneo.html.
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↵Identified EST or contig does not have a significant BLASTx result at http://www.ncbi.nlm.nih.gov/.
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↵EST BLASTx result.
