Patterns of Positive Selection in the Complete NBS-LRR Gene Family of Arabidopsis thaliana

Table 1.

NBS-LRR Sequences Analyzed for Positive Selection

Group Type Sequences Length Identity
1 TNL At1g64070, At2g16870, At5g58120, At1g63750, At1g63870, At1g63880, At1g63730, At1g63740, At1g56510, At1g56520, At1g56540 1364 58.0
2 TNL At5g40910, At5g40920, At5g41550, At5g41540, At5g41750, At5g41740 1011 65.4
3 TNL At4g11170, At5g49140 1183 50.6
4 TNL At5g17970, At5g18360 911 57.5
5 TNL At2g14080, At1g65850, At5g38340, At5g44510, At1g69550, At5g11250, At3g44630, At3g44480, At3g44400, At3g44670 (RPP1) 1436 59.0
6 TNL At5g18350, At5g18370 1272 60.3
7 TNL At5g46450, At5g46470, At4g08450, At5g40060, At1g31540, At5g46260, At5g46270, At5g46510, At5g46520 1249 60.9
8 TNL At5g40100, At1g17600, At1g72840, At4g09430 1025 53.4
9 CNL At1g63360, At1g62630, At5g63020, At5g05400 934 53.9
10 CNL At4g14610, At1g12210, At1g12220, At1g12280, (RPS5), At1g12290, At4g10780 911 59.4
11 NL At1g61180, At1g61310, At1g61300, At1g61190 978 86.3
12 NL At5g43740, At1g51480, At1g15890 868 69.6
13 NL At4g27190, At4g27220 995 50.3
14 CNL At1g58400, At1g58410, At1g58390, At1g59620, At1g59780, At5g43470 (RPP8), At5g48620, At5g35450, At1g53350, At1g10920 949 59.1
15 CNL At3g46530 (RPP13), At3g46730, At3g46710 872 66.3
16 NL At5g04720, At5g47280, At1g33560, At4g33300 858 66.6
17 NL At5g66900, At5g66910 822 73.2
18 TNL At3g51570, At4g19530, At5g45060, At545250 (RPS4), At5g17880 1202 54.1
19 TNL At1g27170, At1g27180 1596 81.5
20 TNL At4g16920, At4g16950 (RPP5), At4g16860, At4g16890, At4g16940, At4g16960, At4g16900, At5g51630 1231 69.2
21 TNL At5g45260, At5g45050 1440 70.9
22 TNL At5g45200, At4g36150 1271 50.5
  • Group designation is arbitrary.

  • TNL, TIR-NBS-LRR; CNL, coiled-coil-NBS-LRR; NL, NBS-LRR.

  • Names from the Munich Information Center for Protein Sequence Arabidopsis database (http://mips.gsf.de/proj/thal/db/index.html).

  • Length of amino acid alignment, with gaps.

  • average within group amino acid sequence identity.

  • In Col-0, this sequence is the most similar to the R gene (in parentheses) characterized in other ecotypes.

  • Characterized R gene in Col-0 (gene name in parentheses).

This Article

  1. Genome Res. 12: 1305-1315

Preprint Server