Table 2.
Novel Proteins
| Acc. No. | Name | Comments |
| Novel proteins and proteins with unclear functions with sequence similarities implicating them in splicing/mRNA processing | ||
| ENSP00000295270 | Hypothetical protein | Similar to U5 snRNP 200 kDa |
| ENSP00000272417 | CDNA FLJ13778 fis | Similar to U5 snRNP 200 kDa |
| ENSP00000301345 | Hypothetical protein | Similar to U5 snRNP 220 kDa |
| TREMBL: Q9NUY0 | CDNA FLJ11063 fis | Similar to arginine/serine-rich 4 |
| SWISS-PROT:Q13523 | Serine/threonine-protein kinase | Ser/Thr protein kinase family, similar to S. pombePRP4 |
| ENSP00000296630 | Hypothetical protein | RRM domain, bipartite NLS, similar to arginine/serine-rich 11 |
| ENSP00000266057 | CDNA FLJ10998 fis | Similar to RNA lariat debranching enzyme |
| ENSP00000273541 | Hypothetical protein | Similar to Isy 1p, a potential splice factor in yeast |
| XP_013029 | Hypothetical protein | Similar to U2 snRNP A′ |
| ENSP00000286032 | Hypothetical protein | Similar to hnRNP A3 |
| ENSP00000301786 | Hypothetical protein | Similar to hnRNP U |
| ENSP000000301784 | Hypothetical protein | Similar to hnRNP U |
| ENSP00000261832 | Hypothetical protein DKFZp434E2220 | BASIC, basic domain in HLH proteins of MYOD family, PSP, proline-rich domain in spliceosome-associated proteins, zinc finger CCHC, zinc knuckle |
| ENSP00000244367 | CGI-124 protein | Cyclophilin-type peptidyl-prolyl cis-transisomerase |
| ENSP00000215824 | CYP-60 | Cyclophilin-type peptidyl-prolyl cis-transisomerase |
| ENSP00000234288 | PPIL3b | Cyclophilin-type peptidyl-prolyl cis-transisomerase |
| ENSP00000282972 | Serologically defined colon cancer antigen 10 | Cyclophilin-type peptidyl-prolyl cis-transisomerase, bipartite NLS |
| SWISS-PROT: Q9UNP9 | Cyclophilin E | Cyclophilin-type peptidyl-prolyl cis-trans isomerase, RRM domain |
| ENSP00000261308 | KIAA0073 protein | Cyclophilin-type peptidyl-prolyl cis-trans isomerase, G-protein beta WD-40 repeats |
| SWISS-PROT: Q92841 | Probable RNA-dependent helicase p72 | DEAD/DEAH-box helicase |
| ENSP00000274514 | RNA helicase | DEAD/DEAH-box helicase |
| ENSP00000242776 | Hypothetical protein | Similar to nuclear RNA helicase, DECD variant of DEAD-box helicase family |
| SWISS-PROT: Q92499 | DDX1 | DEAD/DEAH-box helicase, SPRY domain |
| SWISS-PROT: Q9NR30 | DDX21 | DEAD/DEAH-box helicase, bipartite NLS |
| SWISS-PROT: Q9UJV9 | DEAD-box protein abstract homolog | DEAD/DEAH-box helicase, zinc finger CCHC type |
| ENSP00000218971 | DDX26 | DEAD-box, von Willebrand factor type A domain |
| SWISS-PROT: P38919 | Eukaryotic initiation factor 4A-like NUK-34 | DEAD-box helicase |
| ENSP00000297920 | Hypothetical protein FLJ11307 | Double-stranded RNA-binding domain (DsRBD) |
| ENSP00000263115 | Hypothetical protein | G-patch domain |
| ENSP00000277477 | Far upstream element (FUSE) binding protein 3 | KH domain |
| ENSP00000295749 | KIAA 1604 protein | MIF4G, middle domain of eukaryotic initiation factor 4G and MA3 domain, bipartite NLS |
| ENSP00000298643 | PRO1777 | PWI domain |
| SWISS-PROT: Q9Y580 | RNA-binding protein 7 | RRM domain |
| SWISS-PROT: O43251 | RNA-binding protein 9 | RRM domain |
| ENSP00000295971 | Hypothetical protein FLJ20273 | RRM domain |
| ENSP00000266301 | KIAA 1649 protein | RRM domain |
| SWISS-PROT: Q9Y388 | Hypothetical protein CGI-79.B | RRM domain |
| SWISS-PROT: Q02040 | B-lymphocyte antigen precursor | RRM domain |
| ENSP00000262632 | Hypothetical 47.4 kDa | RRM domain, ATP/GTP-binding site motif A (P-loop) |
| ENSP00000293677 | Hypothetical protein | RRM domain, Bipartite NLS |
| SWISS-PROT: Q9BXP5 | Arsenite-resistance protein 2 | RRM domain, Bipartite NLS |
| ENSP00000220496 | Hypothetical protein FLJ10634 | RRM domain, DNAJ heat shock protein, bipartite NLS |
| TREMBL: O00425 | Putative RNA-binding protein KOC | RRM domain, KH domain |
| ENSP00000262710 | KIAA0670 protein | RRM domain, SAP domain |
| TREMBL: Q96SC6 | OTT-MAL | RRM domain, SAP domain |
| ENSP00000295996 | KIAA0332 protein | RRM domain, Surp domain, Bipartite NLS |
| ENSP00000199814 | Hypothetical protein FLJ10290 | RRM domain, Zinc finger C-x8-C-x5-C-x3-H type |
| SWISS-PROT: P98175 | RNA-binding protein 10 | RRM domain, C2H2 type zinc finger, bipartite NLS |
| ENSP00000261972 (+ENSP00000261973) | Hypothetical protein S164 (+N-terminal extension: CDNA: FLJ22454 fis, clone HRC09703) | RRM domain, PWI domain, bipartite NLS, Spectrin repeat (ENSP00000261973 encodes the N-terminal extension of ENSP00000261972) |
| TREMBL: Q9UQ35 | RNA-binding protein | RS domain |
| ENSP00000247001 | F23858_1 | Surp domain, G-patch domain |
| ENSP00000299951 | Hypothetical protein | U1-like zinc finger, bipartite NLS |
| ENSP00000281372 | HsKin17 protein | C2H2 zinc finger |
| TREMBL: Q96KR1 | Putative Zinc finger protein | C2H2 zinc finger |
| ENSP00000239893 | OPA-interacting protein OIP2 | 3′ exoribonuclease family |
| Novel proteins without similarities implicating them in splicing/mRNA processing | ||
| SWISS-PROT: Q9C0J8 | WDC146 | G-protein beta WD-40 repeats |
| ENSP00000253952 | Hypothetical 34.8 kDa protein | G-protein beta WD-40 repeats |
| ENSP00000263222 | Hypothetical 57.5 kDa protein | G-protein beta WD-40 repeats |
| ENSP00000156471 | KIAA0560 protein | ATP/GTP-binding site motif A (P-loop) |
| SWISS-PROT: Q9UH06 ENSP00000216252 | Hypothetical 12.4 kDa protein BK223H9 | PHD-finger (C4HC3 zinc finger) belongs to the UPF0123 family of hypothetical proteins |
| ENSP00000260210 | Hypothetical protein MGC13125 | Bipartite NLS, ankyrin similarity |
| ENSP00000257181 | Hypothetical protein FLJ14936 | Bipartite NLS, similar to unknowns |
| ENSP00000290008 | Hypothetical protein | Bipartite NLS |
| SWISS-PROT: Q9NZB2 | C9orf10 protein | Bipartite NLS, similar to unknowns |
| ENSP00000247026 | Hypothetical 66.4 kDa protein | Bipartite NLS |
| ENSP00000236273 | GCIP-interacting protein p29 | Bipartite NLS, similar to unknowns |
| ENSP00000292314 | Hypothetical protein | Bipartite NLS, similar to unknowns |
| ENSP00000266923 | C21orf70 | Bipartite NLS, similar to unknowns |
| ENSP00000221899 | NY-REN-24 antigen | Bipartite NLS, Ezrin/radixin/moesin family; similar to Drosophila cactin |
| SWISS-PROT: Q14331 | FRG1 protein (FSHD region gene 1 protein) | Bipartite NLS, Lipocalin-related protein and Bos/Can/Equ allergen domain |
| SWISS-PROT: P42285 | KIAA0052 protein | SKI2 helicase family |
| ENSP00000221413 | CGI-46 protein | DnaB helicase family |
| ENSP00000222969 | G10 protein homolog (EDG-2) | G10 protein family |
| ENSP00000279839 | Adrenal gland protein AD-002 | GTP-binding signal recognition particle (SRP54) G-domain |
| ENSP00000278702 | Similar to nuclear mitotic apparatus protein 1 | Involucrin repeat, G-protein gamma subunit, DNA gyrase/topoisomerase IV, subunit A, M protein repeat, bZIP (Basic-leucine zipper) transcription factor family |
| SWISS-PROT:Q92733 | Proline-rich protein PRCC | Proline-rich extension |
| ENSP00000263905 | KIAA1461 protein | PWWP domain, Methyl-CpG binding domain |
| XP_089514 | Hypothetical protein | Similar to nucleophosmin |
| ENSP00000258457 | Hypothetical 25.9 kDa protein | Similar to Xenopus ashwin |
| TREMBL: Q8WYA6 | Nuclear associated protein | Similar to Bos taurus P14 |
| TREMBL: Q13769 | Hypothetical protein | Similarity to intermediate filament b [Dugesia japonica] |
| SWISS-PROT: Q9Y5B6 | GC-rich sequence DNA-binding factor homolog | Similar to C-TERMINAL OF GCF/TCF9 and other putative transcription factors |
| SWISS-PROT: Q9Y224 | Hypothetical protein CGI-99 | Similarity to putative transcription factors |
| ENSP00000216038 | Hypothetical 55.2 kDa protein | Uncharacterized protein family UPF0027 |
| ENSP00000289509 | Hypothetical 80.5 kDa protein | Similar to unknowns |
| ENSP00000245838 | Hypothetical protein LOC57187 | Similar to unknowns |
| ENSP00000289996 | Hypothetical protein | Similar to unknowns |
| ENSP00000252137 | DiGeorge syndrome critical region gene DGSI protein | Similar to unknowns |
| ENSP00000256579 | Hypothetical protein FLJ10330 | Similar to unknowns |
| ENSP00000245651 | C20orf158 protein | Similar to unknowns |
| SWISS-PROT: Q9BWJ5 | Hypothetical protein MGC3133 | Similar to unknowns |
| ENSP00000272091 | Hypothetical protein XP_089191 | Similar to unknowns |
| ENSP00000297526 | KIAA1440 protein | Similar to unknowns |
| ENSP00000271942 | Hypothetical protein FLJ21919 | Similar to unknowns |
| TREMBL: Q9BTU2 | Hypothetical 31.5 kDa protein | Similar to unknowns |
| TREMBL: Q8WVN3 | Hypothetical protein | Similar to unknowns |
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↵SWISS-PROT or ENSEMBL accession numbers are given athttp://srs.embl-heidelberg.de:8000 and http://www.ensembl.org.
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↵Domains: RRM: RNA recognition motive; Bipartite NLS: Bipartite Nuclear Localization Signal; SPRY: SP1a/RY anodine receptor SPRY domain; G-patch: named after seven highly conserved glycines; KH: hnRNP K homology domain; PWI: proline-tryptophan-isoleucine motifs; SAP: SAF-A/B, Acinus and PIAS motif; RS: Arginine-Serine repeats; Surp: Suppressor-of-white-apricot splicing regulator domain.
