Parallel Identification of New Genes in Saccharomyces cerevisiae

Table 5.

NORFs Identified by MudPIT Proteomic Analyses

NORF ID Proposed ORF designation Chromosomal location Size (AA) CAI Peptide identified Transcripts per cell
NAL010C YAL063C-A Chr I: 22400-22688 96 0.17 R.YRNKEKGKFISLCK.N 1.8
NBR028W YBR126C-A Chr II: 490808-491014 68 0.16 R.LHQLDGIPHA.- N.D.
NCR024W YCR095W-A Chr III: 289632-289790 52 0.08 H.TKVNKKSSMHAFLCKIYK.R 0.7
NDR129W YDR320W-B Chr IV: 1108476-1108613 45 0.13 L.NSLLFLPICFCLLQLKATCAVR.V 2.0
NDR156C YDR379C-A Chr IV: 1233506-1233267 79 0.16 K. DFTTIEHLLRVGNK.K 1.4
K.ENQVNFVNYIHEEFGK.Y
NGR097C YGR169C-C Chr VII: 836660-836382 92 0.13 K.ERDALLTAEEEQLGK.G 1.0
K.ERDALLTAEEEQLGKGGK.G
K.QRAQMEQLEAEEASK.W
X.QRAQMEQLEAEEASKWEQGSRK.E
NHL007C YHL048C-A Chr VIII: 5796-5662 44 0.08 G.RARMGGLIVKHRFN.H 1.2
NHR007W YHR032W-A Chr VIII: 175186-175365 59 0.06 G.NFKGFAMWHATGKH.H 0.7
NIL001W YIL002W-A Chr IX: 350298-350507 69 0.17 K.DILDVLNLLK.G 1.5
NIR003C YIR018C-A Chr IX: 385698-385561 45 0.10 K.RYLEIMSTASAQ.F 1.0
NIR008W YIR021W-A Chr IX: 398511-398723 70 0.11 K.SDFKKHSKE.I 0.7
NLR127C YLR361C-A Chr XII: 849678-849382 98 0.12 R.TGGHRPQISDEEVSK.R 0.8
NMR066W YMR247W-A Chr XIII: 769282-769425 47 0.10 S.AKLLSGIMALLFNGKSLLRP.I 0.5
NNL014W YNL042W-B Chr XIV: 547109-547366 85 0.11 V.RVATYICQKNESR.F 0.5
NNL029W YN067W-B Chr XIV: 499414-499554 46 0.11 L.MWCTGVVSKTALLTGNFFFS.S 0.4
NNL042C YNL146C-A Chr XIV: 351577-351383 64 0.13 S.AYYVSQVLRICKEMPYR.D 0.2
NNL058W YNL277W-A Chr XIV: 116677-116865 62 0.05 M.CHILPPLR.S −0.2
NOL015W YOL077W-A Chr XV: 185437-185643 68 0.20 L.GLLGLLVVPNPFK.S 2.2
NOL020W YOL097W-A Chr XV: 136219-136404 61 0.12 Q.SMICSSEHENLTCK.Y 0.2
NOL049W YOL155W-A Chr XV: 27083-27217 44 0.08 G.SFNKCVTGYSCRMAIHYY.V 0.0
NOR002C YOR034C-A Chr XV: 397667-397425 80 0.13 R.IWVREKGRKCSFFFF.S 0.8
NPL013C YPL119C-A Chr XVI: 324286-324023 87 0.11 R.NIFEIGGLLLQ.S 0.5
  • CAI values were calculated according to Sharp and Li (1987).

  • The transcriptional expression level of each NORF in approximate copies of transcripts per cell in a log phase cell.

  • Probes to NBR028W were not selected for inclusion on the S98 array.

  • YOL077W-A was discovered by the biochemical purification of the F1F0-ATP synthase complex (Arnold et al. 1998).

  • The ‘-’ indicates the C-terminus of the protein.

  • The ‘.’ after an amino acid indicates the cleavage sites of the peptide. The sequence between the periods in each cell indicates the actual peptide identified by tandem mass spectrometry. (ND) there was no detectable expression in a log phase culture.

  • MudPIT, multidimensional protein identification technology.

This Article

  1. Genome Res. 12: 1210-1220

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