Table 1.
Insertion-deletion (indel) polymorphism summary
| L(intron) | dL | f(minor) | GC(gene) | GC(intron) | Primates | intron sequence |
| 73 | 1 | 0.033 | 0.387 | 0.164 | 95–99% | gtaatttaaaacttaaaattatttatttgattgtatttttattcatgtgctt aaagaattttTcttttttgtag |
| 80 | 1 | 0.054 | 0.595 | 0.787 | N/A | gtgagtcccagggtggggctggggaccgtgggacGggggggggtcccagccc tgccctcacgcccaccccaccgcccccag |
| 81 | 1 | 0.034 | 0.595 | 0.778 | N/A | gtggggcggggcccaggcggggaGgggggcccacgcagcggagcagccccaa catcccgcggccatctcccacccccaacag |
| 90 | 1 | 0.022 | 0.595 | 0.700 | N/A | gtgagtgggcaggacaggggcctggggtaggggacagcaagtgaCccccccc tccacagcccagtctgacccaccccttccgtggccgcag |
| 101 | −3 | 0.011 | 0.361 | 0.317 | 88–100% | gtaagaaagcaggtgtctgcaaaaagtcatgtatcgatttattgtttgtaat gatacAGTagtatagcagataactaagacatattttcttgaatttgcag |
| 120 | −3 | 0.021 | 0.516 | 0.292 | 100% | gtattttgtcactcttgaaagtttttattgggtaagaggttcatgccctttg |
| −4 | 0.010 | tcctcattttTTCttcttgttattttatcTTTAtttaCTTTTtccacttca | ||||
| −5 | 0.010 | tgTtttttttcctttag | ||||
| −1 | 0.010 | |||||
| 125 | −1 | 0.021 | 0.411 | 0.376 | 92–98% | gtaaatgTtctcctctttgttcaactcttaagtttcacatccagaagtttcat acactgacaagttgtggctttgatctggtttttgcgtaaccttaaatatga ctttttttttccccaccccag |
| 79 | −2 | 0.354 | 0.374 | 0.234 | 100% | gtagtaaattacttaaattcaatttttccttgaaatAAgtgtgattagtaac ccattattatttcctttttattttcag |
| 81 | −1 | 0.375 | 0.516 | 0.370 | 100% | gtaggaagagtgggagttttgcaaatggacaacTtaaagatggggaagaga atcaaactacacttttttccttttttctag |
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From left to right, we list the intron size, the size change with respect to the major allele, the minor allele frequency, the gene level GC content, the intron level GC content, the degree of conservation relative to their primate orthologs, and lastly, the intron sequence itself with the indel in uppercase. A total of 42 polymorphic sites were identified. There were 30 single-base substitutions and 12 indels, at normalized rates of θ(subst) = 6.75 × 10−4 and θ(indel) = 2.70 × 10−4.
