Functional Cloning, Sorting, and Expression Profiling of Nucleic Acid-Binding Proteins

Table 4.

Computational Filtering of Putative Transcription Factor Binding Sites in Clustered Promoters

CIRBP (11) DBPA (8) HNRPDL (13) PABPC4 (18) SRP75 (41) U2AF65 (20)
Ik-2 Ik-2 Ik-2 Ik-2 Ik-2 Ik-2
Lyf-1 Lyf-1 Lyf-1 Lyf-1 Lyf-1 Lyf-1
HNF-3b HNF-3b HNF-3b
MZF1 MZF1
HFH-2 HFH-2
Sp1 Sp1
ΔEF1
p300
  • This table represents filtered data that appears in Table 3, displaying only binding sites for transcription factors that are enriched by at least 100% in the real (experimentally derived) versus random DNA sequence clusters.

This Article

  1. Genome Res. 12: 1175-1184

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