Predicting Protein Cellular Localization Using a Domain Projection Method

Table 4.

Comparison of Domain Projection and Meta-A Classifications of 2965 Proteins that Could be Predicted by Both Methods

Meta-A Domain Projection
c c,n n,c c,s n n,s s s,c Total
c 109 46 34 11 15 0 29 2 246
c+n 10 30 48 6 5 0 0 0 99
n 156 827 257 14 573 4 8 1 1840
s 25 1 1 0 12 0 537 193 769
c+s 0 0 1 0 0 0 0 10 11
Total 300 904 341 31 605 4 574 206 2965
  • n,c,s are abbreviations for nuclear, cytoplasmic, secreted. E.g., “n,c” means proteins predicted to be either nuclear or cytoplasmic by domain projection, but with a higher probability for the nuclear local. “c+n” means predicted as either nuclear or cytoplasmic by Meta-A, with no preference.

This Article

  1. Genome Res. 12: 1168-1174

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