GFScan: A Gene Family Search Tool at Genomic DNA Level

Table 6.

Genomic Locations with Highest Score Identified by Matrix Search

Chromosome Motif location Strand Score Index in pattern search
A. NGLC Family (S min = 24.027)
20 63883774 63883819 − 29.4595 38
 8 29298192 29298237 − 29.4595 20
 X 104174415 104174460 − 29.0811 2
 8 45473102 45473147 + 29.0541 21
 X 13920432 13920477 + 28.8649 1
15 76752787 76752832 − 29.7568 34
17 8070258 8070655 − 28.5135 37
 6 98309963 98310008 − 28.4324 19
17 5014080 5014125 − 28.4054 35
17 5277202 5277247 − 28.4054 36
 2 237873656 237873701 + 28.3514 7
15 22459117 22459162 + 28.0811 28
 1 1478159 1478204 − 28.0541 5
11 125455215 125455260 − 27.973 26
11 125490330 125490375 − 27.973 27
15 76721719 76721764 − 27.8919 33
 4 184669254 184669299 − 27.6487 15
 2 237886519 237886564 + 27.5946 8
15 76709488 76709533 + 27.5676 32
 8 45498199 45498244 − 27.4324 22
 X 152454639 152454684 − 27.4324 4
 2 178143450 178143495 − 27.3514 6
15 24323276 24323321 + 27.1081 30
15 26565917 26565962 + 27.1081 31
 5 183945827 183945872 + 27.0811 18
15 24261884 24261929 + 27.0541 29
 5 174399293 174399338 − 26.7027 16
11 2590910 2590955 − 26.5946 25
 4 51222053 51222098 − 26.5135 13
10 96875579 96875624 + 26.2432 24
 4 50330199 50330244 − 26.2432 11
 4 166964539 166964584 + 25.7027 14
 5 174946361 174946406 + 25.6757 17
 4 50782012 50782057 + 25.5135 12
 3 104298897 104298942 − 25.1351 9
 4 50085574 50085619 − 24.3243 10
 X 152091806 152091851 − 24.027 3
B. CA Family (S min = 32.6429)
16 77218848 77219708 + 39.2143 15
16 77672109 77672969 + 39.2143 16
 4 138352740 138353600 + 39.2143 5
16 23047764 23050079 − 39.0714 12
16 33401499 33403805 − 39.0714 13
16 33986402 33988707 − 39.0714 14
 8 89982297 90014490 + 38.8571 8
15 60482427 60485863 + 38.4286 11
 9 38809920 38819255 + 37 10
 8 89796759 89803951 + 36.9286 6
 8 90013921 90014490 + 36.8572 9
17 64513194 64513368 + 36.4286 18
 8 89871143 89874524 − 36.4286 7
 1 9063801 9065482 + 35.8571 3
17 55604726 55621766 − 35.3571 17
 3 68787364 68790131 + 34.5 4
19 57549926 57550194 − 34 19
 1 230527143 230527424 − 32.6429 1
 1 230570250 230570531 + 32.6429 2

  • ↵ S min is the minimum score of the motifs from known family members.

This Article

  1. Published in Advance June 18, 2002, doi: 10.1101/gr.220102 Genome Res. 12: 1142-1149

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