Computation-Based Discovery of Related Transcriptional Regulatory Modules and Motifs Using an Experimentally Validated Combinatorial Model

Table 1.

Selected Subset of Elements

Element Closest gene(s) Chromosome bp location Expression data in mesoderm
DME1 eve/TER94 2R 5014107 Y Y
DME2 stumps (hbr) 3R 10352207 Y Y
DME3 dmcf2 2R 4951127 Y Y
DME4 mcso18E/CG12531 X 19459844 Y Y
DME5 CG15391/dpp 2L 2352035 Y Y
DME6 fru 3R 14282221 Y Y
DME7 rst/CG4116 X 2797776 Y Y
DME8 Btk29A 2L 8173348 Y Y
DME9 CG17588/TpnC41C 2R 278747 Y N
DME10 SRPK/Mtk 2R 10364562 Y N
DME11 CG13740/hig 2R 4256438 Y N
DME12 Acp76A/CG3797 3L 18944209 Y N
DME13 pav/CG15010 3L 4220351 Y N
DME14 Acp76A/CG3797 3L 18940434 Y N
DME15 ara/caup 3L 12514566 Y N
DME16 nAcRα-96Aa/b 3R 20193510 Y N
DME17 CG14506/Cnx99A 3R 25025121 Y N
DME18 beat 2L 15897130 Y N
DME19 CG6634/CG14020 2L 5391354 N n/a
DME20 CG5833/CG13133 2L 9990955 N n/a
DME21 CG14006/11147 2L 5649514 N n/a
DME22 CG10030 2L 3629606 N n/a
DME23 RfeSP/10871 2L 1623318 N n/a
DME24 CG12511/CG7236 2L 5630916 N n/a
DME25 CG15357/CG7312 2L 1876200 N n/a
DME26 sif 3L 5644285 N n/a
DME27 CG3746/CG6664 3L 16908965 N n/a
DME28 CG10632 3L 12484307 N n/a
DME29 CG6738/CG13830 3L 18842876 N n/a
DME30 CG5214/KP78b 3R 7086876 N n/a
DME31 CG9458/CG7921 3R 5628192 N n/a
DME32 CG7920/CG7921 3R 25722579 N n/a
DME33 sp2/CG14277 2L 8142925 N n/a
DME34 CG4546/CG9625 3R 11607475 N n/a

  • ↵Based on annotations present in Flybase.

  • ↵Includes all annotations for mesoderm.

  • ↵Known to have expression in embryonic dorsal mesoderm.

This Article

  1. Genome Res. 12: 1019-1028

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