Shannon Information Theoretic Computation of Synonymous Codon Usage Biases in Coding Regions of Human and Mouse Genomes

Table 7.

Synonymous Codon Frequencies for RefSeq NM_002246 Relative to Pooled Synonymous Codon Frequencies for 10862 Human RefSeqs

Amino acid Codon number
1 2 3 4 5 6
PHE 0.000 1.868
LEU 0.180 1.620 0.000 1.621 0.000 0.183
ILE 0.000 2.113 0.000
MET 1.000
VAL 0.000 1.237 0.000 1.528
SER 0.000 1.692 0.203 3.785 0.000 1.640
PRO 0.000 1.247 0.360 4.405
THR 0.144 1.315 0.000 4.278
ALA 0.000 1.325 0.256 3.942
TYR 0.000 1.801
HIS 0.000 1.726
GLN 0.000 1.360
ASN 0.000 1.894
LYS 0.000 1.760
ASP 0.193 1.717
GLU 0.000 1.757
CYS 0.000 1.839
TRP 1.000
ARG 0.000 3.494 0.302 1.174 0.000 0.343
GLY 0.319 2.167 0.208 0.653

This Article

  1. Genome Res. 12: 944-955

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