Figure 2.
The calculated logarithm of odds (LOD) scores in textual information analysis correlated well with the accuracy of GO predictions. The result is based on self-validation studies. LOD score is calculated as defined in Methods. Only predictions made with LOD scores above 2 were evaluated here and used in the GO Engine. Any LOD scores above 99 are collapsed to 99. GO prediction for any particular protein is considered accurate if the predicted GO node is the same as one of the input GO nodes for this protein or the predicted GO node is a parent or a child of one of the input GO nodes.
