Determination of Redundancy and Systems Properties of the Metabolic Network of Helicobacter pylori Using Genome-Scale Extreme Pathway Analysis

Table 4.

Network Redundancy Comparison Between the Two Indicated in silico Organisms

In silico organism Genome size ORFs in genome Reactions in model No. of EP/ES
H. influenzae 1.83 Mb 1740 461 46
H. pylori 1.67 Mb 1590 381 2

  • Isozymes in the input file were not included in this study. The amino acid set included in this comparison includes asparagine, aspartic acid, glutamine, lysine, proline, serine, threonine, and tyrosine. EP indicates extreme pathways; ES, unique external state; and ORF, open reading frame.

This Article

  1. Published in Advance April 12, 2002, doi: 10.1101/gr.218002 Genome Res. 12: 760-769

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