Structure and Evolution of the Smith-Magenis Syndrome Repeat Gene Clusters, SMS-REPs

Table 2.

Genes/Pseudogenes Found in the SMS-REPs

Name GenBank accession no. Size (bp) Distal SMS-REP (np) Middle SMS-REP (np) Proximal SMS-REP (np) Chromosomal sites of possible real genes
Possible genes KIAA0565 AB011137 5140 1–5140 In finishing 1–5140 17p11.2
FLJ11800 AK021862 2281 1–2281 1–2281 1–2165 17p11.2
Pseudogenes LGALS9 AB006782 1725 (−) 4–1725 4–1725 11
UPF3A AF318575 2293 155–2269 (−) 158–2274 13 or 18?
SRP68 AF195951 1860 1119–1372 1120–1372 1119–1372 17?
TL132 AJ012755 4413 1–4413 (4173–4326) 1–4413 (4173–4326) 1–4413 (4173–4326) 17?
NOS2A U20141 3946 2590–2795 2590–3946 2590–3946 17q11.2-q12
MIP U72395 3015 (−) 1–3007 1–3007
KER M22928 3126 1–3126 (−) (−) 17?
KER M22927 1939 1–1939 1–1382 1–1382
KER M37818 9697 1–9696 1–9696 1–9696
DKFZp434O047 AL117394 3118 (−) 1–3015 1–3015 17q11.2
USP6 (TRE) X63596 4426 (−) 1–245, 1735–4419 1–245, 1735–4419 17q11
CLP L54057 1824 77–1806 (−) 78–1795 16q24
  • Repeated in reverse direction.

  • Some parts repeated.

  • Nucleotide position (np) denotes the portion of the gene sequence in each SMS-REP.

This Article

  1. Genome Res. 12: 729-738

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