Table 3.
Putative Genes Identified within the Mouse Syntenic Region of the SMCR
| Group | Gene names | Accession number | Exons | mRNA (bp) | ORF (aa) | Expression profiles | Reference | Human homologs |
| I. Genes | 2010013E09Rik | AK008226 | 5 | 1271 | 111 | N/1.8, all; RT embryo (+) | NT5M | |
| Flj10193 | AF467888 | 2 | 740 | 142 | N/4.0, 2.5, 1.3, all; RT/embryo (+) | FLJ10193 | ||
| Rasd1 | NM_009026 | 2 | 1623 | 280 | N/2.1, heart, brain, kidney, and liver | Kemppainen and Behrend 1998 | RASD1 | |
| Pemt | NM_008819 | 7 | 600 | 200 | N/1.0, only liver after birth | Walkey et al. 1996 | PEMT | |
| Rai1 | NM_009021 | 2 | 7222 | 1840 | RT/adult (+), before embryo 10 dpc (+) | RAII | ||
| Srebf1 | AF374266 | 18 | 3570 | 1076 | RT/ubiquitous | SREBF1 | ||
| Tom112 | AF467887 | 15 | 1678 | 507 | N/all, with 7 splice variants; RT/embryo (+) | TOM1L2 | ||
| 4930449E07Rik | AK015430 | 14 | 1860 | 523 | N/2.2, predominantly in testis; RT/embryo at 15 dpc (+) | DKFZp586M1120 | ||
| Atp12 | BC013607 | 8 | 1813 | 289 | RT/ubiquitous | ATP12 | ||
| 4933439F18Rik | AK017120 | 8 | 1717 | 217 | N/2.0, all except spleen; RT/embryo (+) | MGC3048 | ||
| Drg2 | NM_021354 | 13 | 1713 | 364 | N/2.0, low in sk. mus. | Li et al. 2000 | DRG2 | |
| Myo15 | NM_010862 | 66 | 11769 | 3511 | N/1.2, pituitary gland | Liang et al. 1999 | MYO15A | |
| LIglh | NM_008502 | 22 | 4279 | 1034 | RT/adult (+), embryo (+) | Tomotsune et al. 1993 | LLGLI | |
| Fliih | NM_022009 | 31 | 4012 | 1271 | RT/adult (+), embryo (+) | FLII | ||
| Top3a | AB006074 | 20 | 3741 | 1003 | N/3.8, predominantly in testis | Seki et al. 1998 | TOP3A | |
| Shmtl | AF237702 | 13 | 1771 | 478 | N/2.1, 3.2, liver | Liu et al. 2001 | SHMT1 | |
| II. Predicted genes | 1700013G23Rik | AK005951 | 2 | 293 | NA | RT/testis | ||
| Flj20308 | BI412421 | 3 | 783 | NA | N/6.0, 3.5; ubiquitous | FLJ20308 | ||
| Ubl | NA | 2 | cluster | NA | RT/ubiquitous | |||
| Pabplp | NA | 2 | cluster | NA | RT/testis, weak in embryos 10 dpc and 15 dpc | |||
| Smcr7 | BF582554 | 1 | 694 | NA | N/2.6, heart, liver; RT/embryo after 10 dpc (+) | SMCR7 | ||
| Smcr8 | AK010198 | 1 | 1050 | NA | N/7.5, 3.8-all except sk. mus.; RT/embryo (+) | SMCR8 | ||
| III. Pseudogene | Rps4 | |||||||
| Protein tyrosine phosphatase 1F2 | ||||||||
| Gapd |
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↵References for gene expression profile. NA, not available. For the gene expression profile, N means data from Northern blotting, and the numbers after the N are the sizes of transcripts in kilobases; RT means data from RT-PCR analyses. Reference is for gene expression profile.
