Table 1.
cpDNA Size, Percentage of Assignments, and Presence of Introns,matK, and IR
| Species | Total DNA cpDNA bp | No.nuclotides in ORFs | No. cod DNA (%) | Prot Total | In Syn COGs | In Syn CyanoB | In other cpDNA | No. assigned | No.introns | Presence ofmatK | Presence of IR | ||||||||||||
| ORFs | (%) | ||||||||||||||||||||||
| Nongreen algae | |||||||||||||||||||||||
| CyaPar | 135,599 | 97,656 | 28.0 | 149 | 83 | 135 | 5 | 9 | 6.0 | 1 | No | Yes | |||||||||||
| GuiThe | 121,524 | 97,233 | 20.0 | 147 | 86 | 132 | 8 | 7 | 4.8 | No | Yes | ||||||||||||
| OdoSin | 119,704 | 91,098 | 23.9 | 140 | 75 | 118 | 3 | 19 | 13.6 | 0 | No | Yes | |||||||||||
| CyaCal | 164,921 | 142,182 | 13.8 | 197 | 115 | 172 | 6 | 19 | 9.6 | No | |||||||||||||
| PorPur | 191,028 | 153,396 | 19.7 | 209 | 120 | 194 | 9 | 6 | 2.9 | 0 | No | ||||||||||||
| Euglenophyta | |||||||||||||||||||||||
| EugGra | 143,172 | 50,964 | 64.4 | 66 | 32 | 52 | 4 | 10 | 15.1 | 155 | Yes | ||||||||||||
| Green algae | |||||||||||||||||||||||
| ChlVul | 150,613 | 91,074 | 39.5 | (174) 106 | 45 | 71 | 2 | (101) 33 | (58.0) | 3 | No | Not present | |||||||||||
| MesVir | 118,360 | 77,412 | 34.6 | 105 | 60 | 95 | 2 | 8 | 7.6 | 0 | No | Yes | |||||||||||
| NepOli | 200,799 | 127,470 | 36.5 | 155 | 64 | 96 | 2 | 57 | 36.8 | 0 | No | Yes | |||||||||||
| Land plants | |||||||||||||||||||||||
| PinThu | 119,707 | 76,605 | 36.0 | (160) 114 | 37 | 63 | 8 | (89) 43 | (55.6) | Yes | Very small | ||||||||||||
| MarPol | 121,024 | 72,528 | 40.1 | 89 | 50 | 78 | 6 | 5 | 5.6 | ≈20 | Yes | Yes | |||||||||||
| SpiOle | 150,725 | 75,108 | 50.2 | 98 | 49 | 76 | 4 | 18 | 18.4 | ≈20 | Yes | Yes | |||||||||||
| AraTha | 154,478 | 85,044 | 44.9 | 88 | 50 | 78 | 9 | 1 | 1.1 | ≈20 | Yes | Yes | |||||||||||
| OenEla | 159,443 | 88,197 | 44.7 | 119 | 50 | 77 | 12 | 30 | 25.2 | Yes | Yes | ||||||||||||
| NicTab | 155,939 | 80,343 | 48.5 | 101 | 50 | 74 | 16 | 11 | 10.9 | ≈20 | Yes | Yes | |||||||||||
| OrySat | 134,525 | 67,434 | 49.9 | 108 | 53 | 78 | 23 | 7 | 6.5 | ≈20 | Yes | Yes | |||||||||||
| ZeaMay | 140,387 | 68,772 | 51.0 | 111 | 50 | 75 | 17 | 19 | 17.1 | ≈20 | Yes | Yes | |||||||||||
| Other | |||||||||||||||||||||||
| EpiVir | 70,028 | 30,348 | 56.7 | 24 | 17 | 20 | 4 | 0 | 0.0 | Yes | Yes | ||||||||||||
| ToxGon | 34,996 | 18,747 | 46.4 | 26 | 11 | 12 | 1 | 13 | 50.0 | ||||||||||||||
| TOTAL | 2266 | 1097 | 1696 | 141 | 429 | ||||||||||||||||||
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Data about the genomes that include the size of each cpDNA, the percentage of encoding DNA (counted as the size of ORFs), the number of proteins assigned for each species, and the presence of introns, maturase (matK) and inverted repeats (IR) in the cpDNAs.
