Table 3.
Proteins Annotated as ORF or unknown which Are Assigned to Proteins of Known Function
| μ-score | Synechocystisproteins | Chloroplasts proteins—ORF or unknown | PSI- BLAST | ||||||||
| Prot. ID | Prot. function | Gene | aa | Prot. ID | Prot. function | Organism | aa | Hits | Prot. detected | ||
| 1 | 17.10 | 6466376 | rubisco expression prot | cfxX/Q | 301 | 1276694 | ORF301 | Porphyra purpurea | 301 | >1000 | CFXQ_CYAME |
| 2 | 12.00 | sll1536 | molybdopterin biosynthesis prot MoeB | moeB | 392 | 1276801 | ORF382 | Porphyra purpurea | 382 | 585 | moeB_MYCTU |
| 3 | 9.60 | sll1536 | molybdopterin biosynthesis prot MoeB | moeB | 392 | 6466397 | chlN (incorrect) | Cyanidium caldarium | 395 | 574 | moeB_MYCTU |
| 4 | 7.60 | sll0621 | thiol:disulfide interchange prot DsbD | dsbD | 248 | 1276830 | ORF240 | Porphyra purpurea | 240 | 58 | cycZ_ECOLI |
| 5 | 5.40 | sll1035 | uracil phosphoribosyl transferase | upp | 216 | 1276820 | ORF198 | Porphyra purpurea | 198 | 88 | UPP_STRSL |
| 6 | 4.70 | slr1365 | BioY prot | bioY | 217 | 1016197 | ORF188 | Cyanophora parado | 188 | 26 | BIOY_BACSH |
| 7 | 3.90 | slr0839 | ferrochelatase | hemH | 387 | 1276821 | ORF48 | Porphyra purpurea | 48 | 47 | HEMZ_SYNY3 |
| 8 | 3.60 | slr1365 | BioY prot | bioY | 217 | 7259544 | unknown | Mesostigma viride | 223 | 2 | bioY_SYNY3 |
| 9 | 2.50 | 11691 | cytochrome b6/f subunit VI (3.5kD) | petL | 31 | 5881712 | ORF31 | Arabidopsis thaliano | 31 | 2 | PETL_BETVU |
| 10 | 2.50 | 12005 | cytochrome b6/f subunit VI (3.5kD) | petL | 31 | 1262631 | ORF62b | Pinus thunbergii | 62 | 2 | PETL_BETVU |
| 11 | 2.50 | 11809 | maturase K | matK | 509 | 295955 | ORF506 | Euglena gracilis | 506 | 994 | mat_PSEAL |
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List of ORFs from different cpDNAs for which functional annotation has been possible. The results from PSI-BLAST are also shown, indicating the number of significant hits obtained (column 11), and the ortholog assigned (column 12). Proteins in column 12 are labeled according to SwissProt nomenclature.
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↵Not in Synechocystis.
