Table 1.
Methylated CpG Islands Characterized in Detail
| Clone ID | Methylation pattern | Chromosomal location | Associated genes | ||||
| Accession no. | Predicted function | ||||||
| 3-10 | SMR | 1q44 | 14042537 | Similar to Zn finger protein | |||
| 14423768 | Olfactory receptor 2T1 | ||||||
| hCG1644736 | Similar to olfactory receptor 2T1 | ||||||
| hCG1724357 | Similar to olfactory receptor 2T1 | ||||||
| 3-20 | SMR | 2q36 | 5174481 | Histone deacetylase A | |||
| hCG1651464 | |||||||
| hCG1656118 | |||||||
| hCG1651461 | |||||||
| hCG1651466 | |||||||
| 1-19 | SMR | 4p16 | 3777583 | WFS1 (wolframin) | |||
| 1-41 | SMR | 4q35 | hCG1788598 | Similar to mouse pair-rule gene ODZ3 | |||
| hCG1793025 | Hypothetical protein | ||||||
| hCG1787540 | Similar to mouse pair-rule gene ODZ3 | ||||||
| 4-8 | SMR | 4q35 | hCG1788598 | Adjacent to but distinct from 1-41 | |||
| 3-4 | gDMR | 6q24 | hCG1660630 | HYMA1 | |||
| 4-7 | SMR | 7p22 | 6806913 | Centaurin-α | |||
| hCG1747708 | |||||||
| hCG1790856 | |||||||
| hCG1747710 | Cytochrome P450 homolog | ||||||
| 1-30 | SMR | 7q11.1 | hCG1779529 | Rab5 exchange factor homolog | |||
| hCG1779527 | Antisense to hCG1779529 | ||||||
| hCG1789113 | Antisense to hCG1779529 | ||||||
| 13642872 | 60S ribosomal prot L35 | ||||||
| 6572672 | Putative transcription factor | ||||||
| 1-22 | SMR | 7q36 | 11386149 | Tyrosine phosphatase | |||
| hCG1799787 | BHLF1 protein | ||||||
| 3-2 | SMR | 8p23 | hCG1659058 | Proline-rich mucin homolog | |||
| 2-5 | gDMR | 8q21.2 | 17451956 | Similar to antigen GOR | |||
| hCG1757665 | |||||||
| 2-48 | gDMR | 9p13 | hCG1659616 | ||||
| 1-20 | gDMR | 10q26 | 13325182 | ||||
| hCG1799063 | |||||||
| 3-12 | SMR | 10q26 | 3122245 | Inositol triphosphate phosphatase | |||
| hCG1654478 | |||||||
| 3-30 | gDMR | 11q25 | 17456499 | Hypothetical gene | |||
| hCG37607 | |||||||
| hCG1745526 | Hypothetical protein | ||||||
| 1-5 | SMR | 13q34 | hCG20146 | ||||
| 1-21 | gDMR | 14q32 | 8393715 | Heptacellular cancer candidate | |||
| hCG21408 | Similar to DrosophilaCLIP-190 | ||||||
| 2-42 | gDMR | 16p13.1 | hCG15669 | Ser/Thr protein kinase | |||
| 3-110 | SMR | 17q25 | 8400736 | β-tubulin cofactor D | |||
| 10435982 | |||||||
| 2-1 | SMR | 17q25 | 1655842 | Sulfamidase | |||
| 14149793 | Coiled-coil protein | ||||||
| 1-12 | SMR | 17q25 | hCG1806389 | ||||
| hCG1796817 | |||||||
| 2-78 | gDMR | 18q21 | 13645769 | Elongin A3 | |||
| 3-8 | gDMR | 18q21 | 13645769 | Adjacent to but distinct from 2-78 | |||
| 2-3 | SMR | 18q23 | 6912444 | Voltage-dependent K+ channel | |||
| 1914872 | Choline-binding protein | ||||||
| 5326898 | RNA Polymerase II CTD phosphatase | ||||||
| 1-13 | gDMR | 18q23 | hCG1651089 | ||||
| 6688241 | SALL3 Spalt-like zinc finger protein | ||||||
| hCG20372 | ATPase | ||||||
| 1651088 | Mucin1 precursor | ||||||
| 1-6 | gDMR | 19p13.1 | 14249150 | Hypothetical protein | |||
| 4-3 | SMR | 19p13.3 | 9665054 | Ser/Thr kinase 11 | |||
| hCG23965 | Ankyrin repeat protein | ||||||
| 4506715 | Ribosomal protein S28 | ||||||
| hCG1794585 | |||||||
| 10732648 | Angiopoietin-like protein | ||||||
| 1-2 | SMR | 19q13.4 | 12053197 | Zinc finger protein | |||
| 4505329 | NSF attachment protein | ||||||
| 5901994 | Kaptin-actin binding protein | ||||||
| 5689511 | Na/Ca exchanger protein | ||||||
| 7657128 | Glioma tumor suppressor candidate | ||||||
| 7657054 | EH-Domain containing protein | ||||||
| 7657130 | Glioma tumor suppressor candidate | ||||||
| 2-4 | gDMR | 20q12 | 17484155 | Nuclear factor of activated T-cells 2 | |||
| hCG1800975 | |||||||
| hCG1653833 | |||||||
| 13378306 | Brain RPTmam4 isoform | ||||||
| 110743 | Neurofilament triplet H protein | ||||||
| 7799072 | DNA helicase | ||||||
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Accession numbers correspond to GenBank entries, within 10 kb of the CpG island, unless there is no GenBank entry, in which case they correspond to Celera entries. One additional SMR could not be mapped.
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↵CpG island lies within the transcript.
